View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_59 (Length: 354)
Name: NF14307_low_59
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 12813535 - 12813220
Alignment:
| Q |
17 |
caatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttcnnnnnnnnncaattcaaacaatgatagagatgatttatgggtt |
116 |
Q |
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| T |
12813535 |
caatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttctttgttt--caattcaaacagtgatagagatgatttatgggtt |
12813438 |
T |
|
| Q |
117 |
tcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttctt |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813437 |
tcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttctt |
12813338 |
T |
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| Q |
217 |
caatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggttgatga |
316 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12813337 |
caattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgacttttattttgaagggttgatga |
12813238 |
T |
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| Q |
317 |
actatgaagatgatgatg |
334 |
Q |
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|||||||||||||||||| |
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| T |
12813237 |
actatgaagatgatgatg |
12813220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 89 - 338
Target Start/End: Complemental strand, 22418305 - 22418056
Alignment:
| Q |
89 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
188 |
Q |
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| T |
22418305 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
22418206 |
T |
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| Q |
189 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22418205 |
tgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
22418106 |
T |
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| Q |
289 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
338 |
Q |
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| T |
22418105 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
22418056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 14998449 - 14998348
Alignment:
| Q |
83 |
caattcaaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaag |
182 |
Q |
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||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
14998449 |
caattcaaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaag |
14998350 |
T |
|
| Q |
183 |
aa |
184 |
Q |
| |
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|| |
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| T |
14998349 |
aa |
14998348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
283 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
333 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 48292656 - 48292701
Alignment:
| Q |
20 |
tcatctgtcaaaccctcaaacgaaactaatcaccaatcttactctt |
65 |
Q |
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|||||||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
48292656 |
tcatctgtcaaaccctcaaacgtaactaatcaccattctcactctt |
48292701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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