View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_66 (Length: 333)
Name: NF14307_low_66
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 34054868 - 34054566
Alignment:
| Q |
18 |
gcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagaga |
117 |
Q |
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| T |
34054868 |
gcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagaga |
34054769 |
T |
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| Q |
118 |
gatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgact |
217 |
Q |
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| T |
34054768 |
gatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgact |
34054669 |
T |
|
| Q |
218 |
ctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctatgtaatatggctgcct |
317 |
Q |
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| T |
34054668 |
ctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctgtgtaatatggctgcct |
34054569 |
T |
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| Q |
318 |
ttg |
320 |
Q |
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||| |
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| T |
34054568 |
ttg |
34054566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 47383348 - 47383442
Alignment:
| Q |
199 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
293 |
Q |
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| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
47383442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 47383131 - 47383293
Alignment:
| Q |
18 |
gcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagag |
116 |
Q |
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|||||||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||||| |
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| T |
47383131 |
gcaacttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagag |
47383230 |
T |
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| Q |
117 |
agatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
179 |
Q |
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| T |
47383231 |
agatttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 47818421 - 47818513
Alignment:
| Q |
199 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
293 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgcc |
47818513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 47818279 - 47818366
Alignment:
| Q |
92 |
agagattgagctttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
179 |
Q |
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| T |
47818279 |
agagattgagctttcagtgacagagagatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
199 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
268 |
Q |
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| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 40246059 - 40246156
Alignment:
| Q |
196 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
293 |
Q |
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| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgcc |
40246156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 40245856 - 40246007
Alignment:
| Q |
29 |
aactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagagagatttaggaa |
127 |
Q |
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||||||| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || |||||||||||||||||| | |
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| T |
40245856 |
aactggaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagagagatttaggga |
40245955 |
T |
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| Q |
128 |
gagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
179 |
Q |
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|||||| |||||| |||||||| ||||||||||||| |||| ||||||||| |
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| T |
40245956 |
gagagtggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
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