View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14307_low_67 (Length: 333)

Name: NF14307_low_67
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14307_low_67
NF14307_low_67
[»] chr5 (17 HSPs)
chr5 (6-319)||(40491645-40491958)
chr5 (80-157)||(22017653-22017730)
chr5 (33-117)||(14872588-14872673)
chr5 (30-150)||(17223060-17223181)
chr5 (76-155)||(22023744-22023823)
chr5 (89-157)||(18401265-18401333)
chr5 (76-143)||(8217145-8217211)
chr5 (68-122)||(32075868-32075921)
chr5 (48-125)||(36183335-36183412)
chr5 (67-155)||(41149537-41149624)
chr5 (69-116)||(20203395-20203442)
chr5 (68-150)||(333420-333501)
chr5 (32-109)||(13271486-13271564)
chr5 (71-157)||(19972327-19972413)
chr5 (32-117)||(35323598-35323684)
chr5 (76-137)||(28503255-28503315)
chr5 (94-158)||(38290800-38290863)
[»] chr4 (13 HSPs)
chr4 (218-316)||(27912272-27912370)
chr4 (40-150)||(39791204-39791314)
chr4 (67-155)||(24083196-24083284)
chr4 (32-134)||(26988960-26989062)
chr4 (67-157)||(8938816-8938906)
chr4 (32-152)||(53689000-53689121)
chr4 (70-158)||(7257559-7257646)
chr4 (67-157)||(41945204-41945292)
chr4 (80-157)||(38303297-38303374)
chr4 (104-159)||(12311870-12311925)
chr4 (74-117)||(39927518-39927561)
chr4 (67-117)||(7257320-7257370)
chr4 (69-157)||(782366-782453)
[»] chr7 (11 HSPs)
chr7 (29-180)||(22713388-22713539)
chr7 (68-180)||(3255095-3255207)
chr7 (68-180)||(17115915-17116027)
chr7 (67-157)||(35356362-35356450)
chr7 (34-151)||(17298361-17298478)
chr7 (105-158)||(35424872-35424925)
chr7 (69-156)||(16377879-16377965)
chr7 (30-180)||(44453591-44453741)
chr7 (102-180)||(40172468-40172546)
chr7 (68-146)||(2391616-2391693)
chr7 (67-157)||(12426990-12427081)
[»] chr8 (10 HSPs)
chr8 (29-149)||(37507529-37507649)
chr8 (68-180)||(13818775-13818886)
chr8 (27-155)||(27157666-27157794)
chr8 (67-131)||(40506645-40506709)
chr8 (89-155)||(7632707-7632773)
chr8 (69-143)||(8757187-8757260)
chr8 (75-134)||(40899664-40899723)
chr8 (67-117)||(6030067-6030117)
chr8 (75-132)||(39555897-39555953)
chr8 (34-129)||(9748309-9748404)
[»] chr6 (22 HSPs)
chr6 (75-180)||(29389129-29389234)
chr6 (83-152)||(30525817-30525886)
chr6 (75-180)||(6359041-6359146)
chr6 (34-157)||(6978474-6978598)
chr6 (67-180)||(31596497-31596610)
chr6 (75-151)||(29263808-29263884)
chr6 (67-157)||(9929326-9929415)
chr6 (105-166)||(18075505-18075566)
chr6 (69-134)||(21871688-21871753)
chr6 (67-175)||(33240828-33240934)
chr6 (67-132)||(33450835-33450900)
chr6 (83-147)||(31257586-31257650)
chr6 (75-133)||(9475335-9475392)
chr6 (32-117)||(30522108-30522194)
chr6 (68-157)||(33192022-33192112)
chr6 (78-158)||(989529-989608)
chr6 (80-180)||(3049774-3049874)
chr6 (82-118)||(33013239-33013275)
chr6 (54-150)||(6355707-6355807)
chr6 (75-117)||(7591096-7591138)
chr6 (75-132)||(2513128-2513184)
chr6 (75-131)||(13214180-13214236)
[»] chr3 (15 HSPs)
chr3 (67-152)||(1750098-1750183)
chr3 (67-180)||(26665443-26665556)
chr3 (74-176)||(44053400-44053501)
chr3 (80-157)||(15462067-15462143)
chr3 (98-179)||(42110934-42111015)
chr3 (68-151)||(26988676-26988758)
chr3 (74-133)||(51715049-51715107)
chr3 (67-180)||(53852056-53852166)
chr3 (67-117)||(33513407-33513457)
chr3 (32-178)||(7925338-7925484)
chr3 (75-154)||(25123261-25123339)
chr3 (89-151)||(20704982-20705044)
chr3 (75-120)||(25838101-25838145)
chr3 (80-157)||(31219213-31219288)
chr3 (80-149)||(33995657-33995725)
[»] scaffold0110 (1 HSPs)
scaffold0110 (74-157)||(6444-6527)
[»] chr2 (14 HSPs)
chr2 (33-157)||(43050109-43050233)
chr2 (80-150)||(38308073-38308143)
chr2 (67-176)||(24510926-24511034)
chr2 (31-151)||(37267706-37267826)
chr2 (76-180)||(10696319-10696422)
chr2 (105-157)||(22417302-22417354)
chr2 (67-157)||(24166823-24166912)
chr2 (29-157)||(13019639-13019768)
chr2 (32-118)||(13378425-13378513)
chr2 (76-157)||(34810326-34810407)
chr2 (80-180)||(775036-775135)
chr2 (68-151)||(2917498-2917581)
chr2 (115-181)||(19943453-19943519)
chr2 (67-117)||(45203216-45203266)
[»] chr1 (14 HSPs)
chr1 (49-157)||(37865450-37865559)
chr1 (67-136)||(48400944-48401012)
chr1 (67-117)||(31577999-31578049)
chr1 (80-180)||(23404921-23405020)
chr1 (70-152)||(2749180-2749261)
chr1 (69-121)||(35814550-35814602)
chr1 (98-181)||(563854-563936)
chr1 (76-137)||(5820128-5820189)
chr1 (67-176)||(46939978-46940087)
chr1 (105-176)||(32556468-32556539)
chr1 (94-152)||(30527700-30527757)
chr1 (67-109)||(31767947-31767989)
chr1 (76-117)||(7439100-7439141)
chr1 (69-106)||(10308233-10308270)
[»] scaffold0071 (1 HSPs)
scaffold0071 (80-157)||(49-125)
[»] scaffold0053 (1 HSPs)
scaffold0053 (75-121)||(16272-16318)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 40491645 - 40491958
Alignment:
Q  6 aatatcagccatgctaacatgaatgaccattacatttcccaccctattagtttctcttgtgcctatttggattctaaaatccaaaatgtttcaacgtgtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40491645 aatatcagccatgctaacatgaatgaccattacatttcccaccctattagtttctcttgtgcctatttggattctaaaatccaaaatgtttcaacgtgtt 40491744  T
Q  106 tttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactcaaggtgggtaaaaaagcagtcaacat 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40491745 tttggaggtttttatgaggtgtttatgccgtttagattctataatccaaactatgtagggcacgcgagaaactcaaggtgggtaaaaaagcagtcaacat 40491844  T
Q  206 gaatacatcattacgttcagatctagataattcatccagttcagccagggccacaacctttgtgcgtgtggccctaaaactaaaatcaaactttcacctc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  40491845 gaatacatcattacgttcagatctagataattcatccagttcagccagggccacaacctttgtgcatgtggccctaaaactaaaatcaaactatcacctc 40491944  T
Q  306 tgtaaagatgaaga 319  Q
     |||||||||||||    
T  40491945 cgtaaagatgaaga 40491958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 22017653 - 22017730
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  22017653 taaaatctgaaatgtttcaacgcgtttttggaggtttttatggggtgtttatgccattcggattctataatccgaact 22017730  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 14872588 - 14872673
Alignment:
Q  33 cattacatttcccaccctattagtttctcttgtgc-ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    |||||| |||||||||||||||| ||||| || || || |||  ||||||||||||||||| ||||||||||||||| ||||||||    
T  14872588 cattacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggtttt 14872673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 17223060 - 17223181
Alignment:
Q  30 gaccattacatttcccaccctattagtttctcttgtgcct-atttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtt 128  Q
    ||||||||| |||||||||  || ||||||||  | |||| |||| ||||||||||||  |||| |||||||||||||||| ||||||||||| |||||     
T  17223060 gaccattacttttcccacctgatgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttttatgaggtgtg 17223159  T
Q  129 tatgccgtttagattctataat 150  Q
    ||| | |||  |||||||||||    
T  17223160 tatactgttcggattctataat 17223181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 22023823 - 22023744
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaa 155  Q
    ||||| |||| | |||||||||||| ||||||||||| ||||||| ||||||||||||||||   |||||||||| ||||    
T  22023823 attctgaaattccaaatgtttcaacatgtttttggagctttttatagggtgtttatgccgttggaattctataattcgaa 22023744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 18401265 - 18401333
Alignment:
Q  89 aaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||||||||||||||||||||| | |||| |||||||||||  |||  |||||||| ||||||||    
T  18401265 aaatgtttcaacgtgtttttggaggtctgtatgaggtgtttatgctttttgaattctatattccgaact 18401333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 8217145 - 8217211
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagatt 143  Q
    |||||||||||  |||||||| |||||||||||| || ||||||||||||||||||| | ||||||||    
T  8217145 attctaaaatctgaaatgttttaacgtgtttttg-agatttttatggggtgtttatgtcatttagatt 8217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 32075868 - 32075921
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatgg 122  Q
    ||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  32075868 ctattcggattctaaaatccaaaatgttttaacgtg-ttttagaggtttttatgg 32075921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 36183335 - 36183412
Alignment:
Q  48 cctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggt 125  Q
    ||||| |||||||| || ||| |||| |||||||||||||| |||||||||||| |  |||||||||||||||||||||    
T  36183335 cctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaacat-attttggaggtttttatggggt 36183412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 41149537 - 41149624
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaa 155  Q
    |||||||| |||||||||||||| || ||||| |||||||||| | | ||||||||| | ||||||| ||| | |||||| ||||||||    
T  41149537 cctatttgaattctaaaatccaacatatttcatcgtgtttttgaaag-ttttatgggatttttatgcggttcaaattctaaaatccgaa 41149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 20203442 - 20203395
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggttt 116  Q
    ||||||||||| |||||||||||| ||| ||| |||||||||||||||    
T  20203442 tatttggattcaaaaatccaaaatattttaacatgtttttggaggttt 20203395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 333420 - 333501
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataat 150  Q
    ||||| ||||| ||||||| ||||| ||| |||||||||| |||| ||| |||| ||||||||||| ||| ||||| ||||||    
T  333420 ctattcggattttaaaatcgaaaatattttaacgtgttttgggag-tttctatgaggtgtttatgctgttcagattatataat 333501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 13271564 - 13271486
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttg 109  Q
    ||||||| ||| ||||| ||||||||||||  | | |||||||| |||||||||||  |||| ||||||||||||||||    
T  13271564 ccattactttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttg 13271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 19972327 - 19972413
Alignment:
Q  71 tttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    ||||||||||||||||||| |||||| ||||||||||    ||  ||||| || |||||||| ||||  ||||||||||| ||||||    
T  19972327 tttggattctaaaatccaagatgttttaacgtgttttgaaggggatttataggatgtttatggcgttcggattctataattcgaact 19972413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 35323598 - 35323684
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||||| ||||||||| ||| || ||||| || | ||||||  ||||||||||||| |||| ||||||||| |||||| |||||||    
T  35323598 ccattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggtttt 35323684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 28503315 - 28503255
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtt 137  Q
    |||||||||||  |||| ||||||||| |||| |||||||||||||| || |||||||||||    
T  28503315 attctaaaatctgaaatatttcaacgtatttt-ggaggtttttatggagtatttatgccgtt 28503255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 38290800 - 38290863
Alignment:
Q  94 tttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaacta 158  Q
    ||||||| |||||||||||| ||||||||||| ||||| | |||| ||||||| |||| ||||||    
T  38290800 tttcaacatgtttttggagg-ttttatggggtttttattcagtttggattctaaaatctgaacta 38290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 27912370 - 27912272
Alignment:
Q  218 acgttcagatctagataattcatccagttcagccagggccacaacctttgtgcgtgtggccctaaaactaaaatcaaactttcacctctgtaaagatga 316  Q
    ||||||||||||||||  |||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||| ||||||||| ||||||    
T  27912370 acgttcagatctagatcgttcatccaattcagccagggccaccaccattgtgcttgtggccctaaaactaaaattaaacttttacctctgtacagatga 27912272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 39791204 - 39791314
Alignment:
Q  40 tttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgttt 138  Q
    |||| |||||||| |||||||| || | |||||||| |||||||||||| |||| |||||||||||||| | || ||||||||||||||||||||||||     
T  39791204 tttctcaccctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtgtttt-gaagatttttatggggtgtttatgccgttc 39791302  T
Q  139 agattctataat 150  Q
     |||||||||||    
T  39791303 ggattctataat 39791314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 24083196 - 24083284
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaa 155  Q
    ||||||||||||||||||||| |||| ||| ||||||| ||  ||| |||||||||||||||||||| |||| |||| |||||||||||    
T  24083196 cctatttggattctaaaatccgaaatattttaacgtgtgttaagagatttttatggggtgtttatgcagtttggattatataatccgaa 24083284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 26989062 - 26988960
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgttta 130  Q
    ||||||| ||||||||||||| |||||||   ||||| ||| | ||||||||||||| |||||||| |||||| ||||| ||||||||||||||||| ||    
T  26989062 ccattacttttcccaccctatgagtttcttgcgtgccctatctagattctaaaatccgaaatgttttaacgtg-ttttgaaggtttttatggggtgtata 26988964  T
Q  131 tgcc 134  Q
    ||||    
T  26988963 tgcc 26988960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 8938816 - 8938906
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||| | | ||||||| |||||||| |||| |||||||||| ||||||||||| |||||| ||||||| || |||| ||||||||||    
T  8938816 cctatttgaagtttaaaatctaaaatgttacaacatgtttttggatgtttttatgggatgtttacgccgtttggactctacaatccgaact 8938906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 53689000 - 53689121
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtgc-ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgttta 130  Q
    ||||||| ||| ||||||||  ||||||||   ||| ||||| ||| |||||| |  ||||||||||||||| |||||| |  |||||||||||||||||    
T  53689000 ccattacttttaccaccctaggagtttctcgcatgctctattcggaatctaaattttaaaatgtttcaacgtatttttgaaattttttatggggtgttta 53689099  T
Q  131 tgccgtttagattctataatcc 152  Q
    || |||| ||||||||||||||    
T  53689100 tgtcgttcagattctataatcc 53689121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 7257646 - 7257559
Alignment:
Q  70 atttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaacta 158  Q
    |||| ||||||||||||| ||||||||| ||||||||| |||||||||  |||||   ||||| ||||| |||||||||||||||||||    
T  7257646 atttagattctaaaatccgaaatgtttcgacgtgtttt-ggaggttttattgggggtattatgtcgtttggattctataatccgaacta 7257559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 41945292 - 41945204
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||| |||||||||||  |||||||| ||| || ||||| |||||||||| ||||||||||| ||||  |||| |||||||||||||    
T  41945292 cctatttgaattctaaaatctgaaatgttttaacatg-ttttgaaggtttttat-gggtgtttatgtcgttcggattatataatccgaact 41945204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 38303297 - 38303374
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||  ||||||||||| | ||||||||||||||||||    | ||||||||||||  |||||||||||||||||    
T  38303297 taaaatctgaaatgtttcaatgcgtttttggaggtttttatacaatatttatgccgtttgtattctataatccgaact 38303374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 12311870 - 12311925
Alignment:
Q  104 tttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactat 159  Q
    ||||| ||| |||||||| ||||||||| |||||  ||||||||||||||||||||    
T  12311870 tttttagagatttttatgaggtgtttattccgttcggattctataatccgaactat 12311925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 39927561 - 39927518
Alignment:
Q  74 ggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||    
T  39927561 ggattttaaaatccgaaatgtttcaacgtgtttttgaaggtttt 39927518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 7257370 - 7257320
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    |||||| | |||||||||||||| || ||||||| ||||||||||||||||    
T  7257370 cctattcgtattctaaaatccaagatatttcaacatgtttttggaggtttt 7257320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 782453 - 782366
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||| |||||||||||||| |||| ||||||| | |||||||| | ||||||| ||| ||||||| |||  ||||||| ||| ||||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttgga-gattttatgaggtttttatgcagttcggattctaaaattcgaact 782366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 22713539 - 22713388
Alignment:
Q  29 tgaccattacatttcccaccctattagtttctcttgtgcctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtt 128  Q
    |||||||||| ||| ||||| ||| |||||||| || ||||||||| ||| |||||||  |||| ||||||||||||||||||||||||||  |||||||    
T  22713539 tgaccattactttttccaccttatgagtttctcgtgcgcctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttttacagggtgtt 22713440  T
Q  129 tatgccgtttagattctataatccgaactatgtagggcacgcgagaaactca 180  Q
    |||||| ||  |||| |||||||  |||||| ||| |  || ||||||||||    
T  22713439 tatgccattcggattttataatctaaactatatagagtgcgtgagaaactca 22713388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 3255207 - 3255095
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggca 167  Q
    ||||| ||||||||||||| ||||| ||||||  | |||||| |||||||||||||||||||||||||||  |||| |||||||||||||   ||| |||    
T  3255207 ctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttttatggggtgtttatgccgttctgattatataatccgaactgcatagagca 3255108  T
Q  168 cgcgagaaactca 180  Q
    | |||||||||||    
T  3255107 cacgagaaactca 3255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 17115915 - 17116027
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggca 167  Q
    ||||||||||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||||   |||||||||| | ||||  ||||| |     
T  17115915 ctatttggattttaaaatctaaaatatttcaacgtgtttttgaaagtttttatggggtgtttatgtcgttcgaattctataatacaaactgcgtaggacg 17116014  T
Q  168 cgcgagaaactca 180  Q
     ||||||||||||    
T  17116015 tgcgagaaactca 17116027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 35356450 - 35356362
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||| |||| | ||||  |||| |||||||||||||    
T  35356450 cctatttgaattctaaaatccgaaatgttttaacgtg-ttttggaggtttttatggggt-tttacgtcgttcggattatataatccgaact 35356362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 17298361 - 17298478
Alignment:
Q  34 attacatttcccaccctattagtttctcttgtgcctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgc 133  Q
    ||||| |||| ||| |||| |||||||  ||  ||||||| ||||||||| ||| |||||||| || ||||||||| |  ||| ||| ||||||||||||    
T  17298361 attacttttctcactctatgagtttctagtgcacctatttagattctaaattccgaaatgttttaaagtgtttttgaacatttctatagggtgtttatgc 17298460  T
Q  134 cgtttagattctataatc 151  Q
    ||||| ||||||||||||    
T  17298461 cgtttggattctataatc 17298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 35424925 - 35424872
Alignment:
Q  105 ttttggaggtttttatggggtgtttatgccgtttagattctataatccgaacta 158  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||| |||||    
T  35424925 ttttggaggtttttatgcgatgtttatgccgttcagattctataatccaaacta 35424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 16377965 - 16377879
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaac 156  Q
    ||||| |||| ||||||  ||||| |||  ||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||    
T  16377965 tatttagattttaaaatataaaatatttttacgtgtttttg-aggtttttatgaggtgtttatgcggtttaaattatataatccgaac 16377879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 44453591 - 44453741
Alignment:
Q  30 gaccattacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtt 128  Q
    ||||||||| |||  |||||||| |||||||| |  | |||||| |||||||||||| | |||| |||||||||||||||||| | |||||||| || ||    
T  44453591 gaccattacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaag-ttttatggagtctt 44453689  T
Q  129 tatgccgtttagattctataatccgaactatgtagggcacgcgagaaactca 180  Q
    ||| | |||  ||||||| ||| |||||| | ||| || || ||||||||||    
T  44453690 tatacagttcggattctaaaatgcgaactgtatagagcgcgtgagaaactca 44453741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 40172546 - 40172468
Alignment:
Q  102 tgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactca 180  Q
    ||||||||||||||||||| |||||||||||  ||| | ||||||||||||||| |   |||| || ||||||||||||    
T  40172546 tgtttttggaggtttttattgggtgtttatgttgttcaaattctataatccgaattgcataggacatgcgagaaactca 40172468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 2391616 - 2391693
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattcta 146  Q
    |||||||||||||||||||| |||| ||||||| | |||||  ||| | || |||||| ||||||| ||||||||||||    
T  2391616 ctatttggattctaaaatccgaaatatttcaacatattttttaagg-tcttgtggggtttttatgcagtttagattcta 2391693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 12426990 - 12427081
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacg-tgtttttggaggtttttatggg-gtgtttatgccgtttagattctataatccgaact 157  Q
    |||||| | |||||||||||  ||||||||||||| ||||||||||||  ||||||||  | ||| ||||||| ||||||||||||| |||||    
T  12426990 cctattcgaattctaaaatctgaaatgtttcaacgttgtttttggagg-atttatgggtttttttttgccgttcagattctataatctgaact 12427081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 37507529 - 37507649
Alignment:
Q  29 tgaccattacatttcccaccctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgt 127  Q
    ||||| |||| ||||||||||||| |||||||   | ||| |||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||| |    
T  37507529 tgaccgttacttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtgtttt-ggaggtttttatggggtat 37507627  T
Q  128 ttatgccgtttagattctataa 149  Q
    ||||| |||| |||||||||||    
T  37507628 ttatgtcgttcagattctataa 37507649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 13818775 - 13818886
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggca 167  Q
    ||||||||||| |||||| |||||| |||||||||||||| || ||||| |||||||||||||||  |||| |||||||||||||||||||  |||  |     
T  13818775 ctatttggattttaaaattcaaaatatttcaacgtgtttt-ggtggtttatatggggtgtttatgaagtttggattctataatccgaactacatagaacg 13818873  T
Q  168 cgcgagaaactca 180  Q
    |||||||||||||    
T  13818874 cgcgagaaactca 13818886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 27157794 - 27157666
Alignment:
Q  27 aatgaccattacatttcccaccctattagtttctcttgtgc-ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggt 125  Q
    |||| ||||||| ||| ||||||||| |||||||| || |  ||||| |||||||||||||| || | |||||||||| ||||||| | |||||||||||    
T  27157794 aatggccattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttgga-gattttatggggt 27157696  T
Q  126 gtttatgccgtttagattctataatccgaa 155  Q
     |||||||| ||  ||||||||||||||||    
T  27157695 atttatgccattcggattctataatccgaa 27157666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 40506645 - 40506709
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttat 131  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||||||||||||| ||||||||    
T  40506645 cctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttttatggagtgtttat 40506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 7632707 - 7632773
Alignment:
Q  89 aaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaa 155  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||| |||| |||||||||||| ||||    
T  7632707 aaatatttcaacgtatttttgaaggtttttatcgggtgtttatgtcgttcagattctataattcgaa 7632773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 8757260 - 8757187
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagatt 143  Q
    |||||||| |||||||||||||||||||| | ||| |||| |||||||||||||||| || ||||||||| ||||    
T  8757260 tatttggagtctaaaatccaaaatgtttccatgtg-ttttcgaggtttttatggggtattaatgccgtttggatt 8757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 40899664 - 40899723
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgcc 134  Q
    |||| |||||||  |||| ||| |||||||||||| ||||||||||||||||||||||||    
T  40899664 gattttaaaatctgaaatattttaacgtgtttttgaaggtttttatggggtgtttatgcc 40899723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 6030117 - 6030067
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||| |||||    
T  6030117 cctatttgaattttaaaagccaaaatatttcaacgtgtttttggaagtttt 6030067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 39555897 - 39555953
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatg 132  Q
    |||| |||||||  |||||||||||||||||||| ||| ||||||| |||||||||||    
T  39555897 gattttaaaatctgaaatgtttcaacgtgttttt-gagatttttatagggtgtttatg 39555953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 9748404 - 9748309
Alignment:
Q  34 attacatttcccaccctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgttt 129  Q
    ||||| ||| ||||||||| || |||||  ||||| |||| ||||||||||||||||||   || ||||||||||| ||| ||||||||| ||||||    
T  9748404 attactttttccaccctatgagcttctcccgtgccctattcggattctaaaatccaaaaaaatttaacgtgttttt-gagatttttatggagtgttt 9748309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 29389234 - 29389129
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgaga 174  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||  |||| ||||||||||||| | |||| |  ||||||    
T  29389234 gattttaaaatccgaaatgtttcaacgtgtttttgaaggtttttattgggtgtttatgctgttcggattttataatccgaactgtataggacgtgcgaga 29389135  T
Q  175 aactca 180  Q
    ||||||    
T  29389134 aactca 29389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 30525886 - 30525817
Alignment:
Q  83 aatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatcc 152  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||||||    
T  30525886 aatccgaaatgtttcaacgtgtttttggaggtttttatgagatgtttatgccgttcggattctataatcc 30525817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 6359041 - 6359146
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgaga 174  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||| ||||| ||| | |||  ||||||||||| |||||   || ||||| |||||    
T  6359041 gattctaaaatccaaaatatttcaacgtatttttggatgtttttatggagtgttaatgtcatttgaattctataatctgaactgcataaggcacacgaga 6359140  T
Q  175 aactca 180  Q
    ||||||    
T  6359141 aactca 6359146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 6978598 - 6978474
Alignment:
Q  34 attacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgt-gtttttggaggtttttatggggtgtttat 131  Q
    ||||| ||| ||| ||||| |||||||| || | |||||||||||||||||||| ||||| |||||||||  |||||||||| |||||||| || |||||    
T  6978598 attactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggagg-ttttatggagtttttat 6978500  T
Q  132 gccgtttagattctataatccgaact 157  Q
    || |||| ||||||| ||||||||||    
T  6978499 gcagtttggattctaaaatccgaact 6978474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 31596610 - 31596497
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||| | ||| |||||||  ||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||| ||||  |||| | |||| |    
T  31596610 cctattcgaattttaaaatctgaaatgtttcaacgtgtttttggaggattttattgggtgtttatgccgttcaaattctacaatctaaactgtataggac 31596511  T
Q  167 acgcgagaaactca 180  Q
     ||||| |||||||    
T  31596510 gcgcgaaaaactca 31596497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 29263884 - 29263808
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatc 151  Q
    |||| ||||||| |||||||||||| ||||||||| || ||||||| ||||||||||| |||| |||||||||||||    
T  29263884 gattttaaaatcgaaaatgtttcaatgtgtttttgaagatttttattgggtgtttatgtcgttcagattctataatc 29263808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 9929326 - 9929415
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    ||||||| |||| |||||||  |||| |||||||||||||| ||||||||||||| |||||||||| ||||   |||||||||||||||||    
T  9929326 cctatttagattttaaaatctgaaatctttcaacgtgtttt-ggaggtttttatgaggtgtttatgacgttcgaattctataatccgaact 9929415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 18075566 - 18075505
Alignment:
Q  105 ttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||| ||||||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  18075566 ttttggtggtttttatggggtgtttatttcgttcagattctataatccgaactacgtagggc 18075505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 21871753 - 21871688
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgcc 134  Q
    ||||||||||||| ||||| ||||||||||  |||||||||||||||||||  |||||||||||||    
T  21871753 tatttggattctagaatccgaaatgtttcatagtgtttttggaggtttttactgggtgtttatgcc 21871688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 33240934 - 33240828
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||| |||||||||||||| |||| |||||||||  ||||| ||||||||||||||| ||||| | |||  ||||||| ||||| |||| | ||||||    
T  33240934 cctattcggattctaaaatccgaaatatttcaacgt--ttttgaaggtttttatggggtatttatacagttcggattctaaaatccaaactgtatagggc 33240837  T
Q  167 acgcgagaa 175  Q
      |||||||    
T  33240836 gtgcgagaa 33240828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 33450835 - 33450900
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatg 132  Q
    |||||| |||||||||||| | |||| |||||||||||||||||||| ||||| | ||||||||||    
T  33450835 cctattcggattctaaaattcgaaatatttcaacgtgtttttggaggcttttaggaggtgtttatg 33450900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 31257586 - 31257650
Alignment:
Q  83 aatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctat 147  Q
    |||| ||||||||||||||| |||||||| |||||||| | |||||||| ||||| |||||||||    
T  31257586 aatctaaaatgtttcaacgtatttttggatgtttttatagagtgtttataccgttcagattctat 31257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 9475335 - 9475392
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgc 133  Q
    ||||||||||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||    
T  9475335 gattctaaaatccgaaatgcttcaacgtgtgtttagaggtttttat-gggtgtttatgc 9475392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 30522194 - 30522108
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||||| ||||||||| ||| || ||||  |||||| |||| |||||| ||||||| ||||||||  |||||||||||||||||||    
T  30522194 ccattacttttcccaccttatgaggttcttgtgtgccctattcggattccaaaatccgaaatgtttttacgtgtttttggaggtttt 30522108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 33192022 - 33192112
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtg-tttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||| |||| |||||||| |||| |||||||||  |||||| || ||||||||  ||||||||||||||  |||| |||||||||||||    
T  33192022 ctatttagattttaaaatccgaaatatttcaacgtaatttttgaagatttttatgaagtgtttatgccgttcggattttataatccgaact 33192112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 989529 - 989608
Alignment:
Q  78 tctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaacta 158  Q
    |||||||||  |||| |||||||||||||||||| | ||||||||||  ||||||| |||  ||||||| |||||||||||    
T  989529 tctaaaatctgaaatatttcaacgtgtttttgga-gattttatgggggttttatgcagttcggattctaaaatccgaacta 989608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 3049774 - 3049874
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactc 179  Q
    |||||| |||| | ||| ||||||||||||  | |||||||||| ||||||| ||||| |||||||||||| |||| |   || | ||||||||||||||    
T  3049774 taaaattcaaatttttttaacgtgtttttgatgatttttatgggttgtttataccgttaagattctataattcgaaatgcataagacacgcgagaaactc 3049873  T
Q  180 a 180  Q
    |    
T  3049874 a 3049874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 33013275 - 33013239
Alignment:
Q  82 aaatccaaaatgtttcaacgtgtttttggaggttttt 118  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33013275 aaatccaaaatgtttcaacgtgtttttggagtttttt 33013239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 6355807 - 6355707
Alignment:
Q  54 agtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtt---tatgccgtttagattctataa 149  Q
    |||||||| |||| |||||||| ||| ||||||| ||||| |||||| || ||||| || ||||||||| ||| ||   ||||||||||||||| |||||    
T  6355807 agtttctcgtgtgtcctatttgaattttaaaatctaaaatatttcaatgtatttttagatgtttttatgaggtattatttatgccgtttagattttataa 6355708  T
Q  150 t 150  Q
    |    
T  6355707 t 6355707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 7591096 - 7591138
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  7591096 gattctaaaatccgaaatatttcaacgtgttttttgaggtttt 7591138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 2513128 - 2513184
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatg 132  Q
    |||||||||||||||||||||| ||| ||  ||||||| |||||||| ||||||||||    
T  2513128 gattctaaaatccaaaatgttttaacatg-atttggagatttttatgaggtgtttatg 2513184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 13214236 - 13214180
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttat 131  Q
    |||| |||||||| |||| ||||||||||||||| ||||||| | | ||||||||||    
T  13214236 gattttaaaatccgaaatatttcaacgtgtttttagaggtttatttagggtgtttat 13214180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 1750098 - 1750183
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatcc 152  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||| ||| ||||||||||  ||||  |||||||||||||    
T  1750098 cctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggtttgtatagggtgtttatttcgttcggattctataatcc 1750183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 26665556 - 26665443
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||||||||| |||||||| |||| ||||||| ||||||  ||  |||||||||| |||||||||||||  ||||||||||| | ||||   ||||||    
T  26665556 cctatttggattttaaaatccgaaatatttcaacatgttttccgaaatttttatgggttgtttatgccgttcggattctataattcaaactgcatagggc 26665457  T
Q  167 acgcgagaaactca 180  Q
     |||||||||||||    
T  26665456 gcgcgagaaactca 26665443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 44053400 - 44053501
Alignment:
Q  74 ggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgag 173  Q
    ||||| ||||||||||||| ||| |||||| ||| ||||||||||||||| | |||||||||||  | || |||||||| |||||| |||||| ||||||    
T  44053400 ggattataaaatccaaaatattttaacgtgcttt-ggaggtttttatgggatatttatgccgttcgggttatataatccaaactatatagggcgcgcgag 44053498  T
Q  174 aaa 176  Q
    |||    
T  44053499 aaa 44053501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 15462067 - 15462143
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||  |||| ||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15462067 taaaatctgaaatatttaaacgtgttttag-aggtttttatggggtgtttatgccgtttggattctataattcgaact 15462143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 42111015 - 42110934
Alignment:
Q  98 aacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactc 179  Q
    ||||||||||||||||||||||||||||||||||| ||||   |||||||||||| | ||   |||||| ||||||||||||    
T  42111015 aacgtgtttttggaggtttttatggggtgtttatgtcgttcgaattctataatccaacctgcatagggcgcgcgagaaactc 42110934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 26988758 - 26988676
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatc 151  Q
    |||||||||||||||||| |||||| ||| || || |||||| ||  |||||||| |||||||||||||||| |||||||||||    
T  26988758 ctatttggattctaaaattcaaaattttttaatgtatttttg-agaattttatggagtgtttatgccgtttaaattctataatc 26988676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 51715049 - 51715107
Alignment:
Q  74 ggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgc 133  Q
    |||||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||    
T  51715049 ggattctaaaatctgaaatgttttaacgtgtttt-ggaggtttttatggggtgtttatgc 51715107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 53852166 - 53852056
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgt-ttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtaggg 165  Q
    |||||| |||||||||||||||||||| ||||  |||| |||||||||||||||| |||| |||||||| || | ||||||||||||||||||  |||||    
T  53852166 cctattcggattctaaaatccaaaatg-ttca--gtgtattttggaggtttttat-gggtatttatgccattcaaattctataatccgaactacataggg 53852071  T
Q  166 cacgcgagaaactca 180  Q
    |  || |||||||||    
T  53852070 cgagcaagaaactca 53852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 33513457 - 33513407
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    |||||| |||||||||||||| |||| |||||||||||||| |||||||||    
T  33513457 cctattcggattctaaaatcctaaatatttcaacgtgttttcggaggtttt 33513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 7925338 - 7925484
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgttta 130  Q
    ||||||| ||| ||||||||| | ||||||  ||| ||||||| ||||||||||||  |||| ||||||||| |||||  ||| |||||| |||||||||    
T  7925338 ccattactttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaagg-ttttatagggtgttta 7925436  T
Q  131 tgccgtttagattctataatccgaactatgtagggcacgcgagaaact 178  Q
    | || ||   |||||||| |||||||    |||||| |||||||||||    
T  7925437 taccattcgaattctatattccgaaccgcatagggcgcgcgagaaact 7925484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 25123261 - 25123339
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccga 154  Q
    |||||||||||||||||| ||| |||| ||||||||||| |||||| |||| |||||||  ||  ||||||| |||||||    
T  25123261 gattctaaaatccaaaatattttaacgcgtttttggagg-ttttatagggtttttatgcacttcggattctaaaatccga 25123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 20704982 - 20705044
Alignment:
Q  89 aaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatc 151  Q
    |||||||| ||| | |||||||||||||||||| | |||| || |||||| ||||||||||||    
T  20704982 aaatgttttaacatatttttggaggtttttatgagatgttgataccgtttggattctataatc 20705044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 25838101 - 25838145
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttat 120  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  25838101 gattctaaaatccaaaatatttcaacatgttttt-gaggtttttat 25838145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 31219213 - 31219288
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||  |||||||||| | |||||| ||||||||| |||||| ||||||||||||  |||||||||||| |||||    
T  31219213 taaaatctgaaatgtttcagcatgtttt-ggaggtttt-atggggagtttatgccgttcggattctataatctgaact 31219288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 33995657 - 33995725
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataa 149  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||| | ||||||  |||| ||||||||||    
T  33995657 taaaatctgaaatgtttcaatgtgtttt-ggaggtttttatgggatatttatgttgtttggattctataa 33995725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 6444 - 6527
Alignment:
Q  74 ggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    ||||| || |||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||  ||||||||||||||||||    
T  6444 ggattttagaatccaaaatgtttcaacgtatttttagaggtttttatgaggggtttatgtcgttcggattctataatccgaact 6527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 43050109 - 43050233
Alignment:
Q  33 cattacatttcccaccctattagtttctcttgtgcct-atttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttat 131  Q
    |||||| ||||||||||||| |||||||     |||| ||| ||||| |||||||  ||||||||||||||||||| |||||||||||  |||| |||||    
T  43050109 cattacttttcccaccctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgtgtttt-ggaggtttttacagggtatttat 43050207  T
Q  132 gccgtttagattctataatccgaact 157  Q
    | ||||| ||||||||||||||||||    
T  43050208 gtcgtttggattctataatccgaact 43050233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 38308143 - 38308073
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataat 150  Q
    |||||||  ||||||||||||||||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  38308143 taaaatctgaaatgtttcaacgtgtttttgaaagtttttatagggtgtttatgccgttcggattctataat 38308073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 24510926 - 24511034
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||| ||||| |||||||  |||| ||| ||||| |||| ||||||||||||||| ||||||||||||||  |||||||||| ||||||   |||||     
T  24510926 cctattcggattttaaaatctgaaatatttaaacgtatttt-ggaggtttttatgggatgtttatgccgtttgaattctataattcgaactgcataggga 24511024  T
Q  167 acgcgagaaa 176  Q
    ||||||||||    
T  24511025 acgcgagaaa 24511034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 37267706 - 37267826
Alignment:
Q  31 accattacatttcccaccctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgttt 129  Q
    |||||||| ||| ||||| ||| || ||||| |||||| ||||||||||||||||||| |||| ||| |||||||||| ||||| ||||||| | | |||    
T  37267706 accattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggagg-ttttatgagattttt 37267804  T
Q  130 atgccgtttagattctataatc 151  Q
    || | ||| |||||||||||||    
T  37267805 atacagttcagattctataatc 37267826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 10696422 - 10696319
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaa 175  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||||||| |||| ||||||| ||||| ||||   ||||||||  |||||    
T  10696422 attctaaaatccaaaatatttcaacgtatttttgaagg-ttttacggggtttttatgcagtttggattctaaaatccaaactgcatagggcacatgagaa 10696324  T
Q  176 actca 180  Q
    |||||    
T  10696323 actca 10696319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 22417302 - 22417354
Alignment:
Q  105 ttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  22417302 ttttggaggtttttatagggtgtttatgccgtttggattatataatccgaact 22417354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 24166823 - 24166912
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||| ||||||| |||| | |||| ||||||| ||||||| |||||||| |||| || |||||| |||||||||||||||| |||||||    
T  24166823 cctattcggattcttaaattcgaaatatttcaacatgtttttagaggtttt-atggagtttttatggcgtttagattctataagccgaact 24166912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 13019768 - 13019639
Alignment:
Q  29 tgaccattacatttcccaccctattagtttctcttgtg-cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgt 127  Q
    |||| ||||| ||| ||||||||| ||||||||  ||| ||| || |||||  ||||||  ||| ||||||| ||| ||||| || ||||||||| ||||    
T  13019768 tgactattactttttccaccctatgagtttctcgcgtgtccttttcggatttgaaaatctgaaacgtttcaatgtgattttgaagatttttatggagtgt 13019669  T
Q  128 ttatgccgtttagattctataatccgaact 157  Q
    ||||||||||  ||||||||||||| ||||    
T  13019668 ttatgccgttcggattctataatccaaact 13019639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 13378513 - 13378425
Alignment:
Q  32 ccattacatttcccaccctattagtttctcttgtg--cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggttttt 118  Q
    ||||||| |||||| | |||||||||||||  |||  |||||| ||||| |||||||  |||| |||||| ||||||||||||||||||    
T  13378513 ccattacttttcccccactattagtttctcacgtgttcctattcggattataaaatctgaaatatttcaatgtgtttttggaggttttt 13378425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 34810326 - 34810407
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||||| | |||| ||||||  |||||||| || |||||||||| |||||||||| |||  ||||| |||||||||||    
T  34810326 attctaaaattcgaaatatttcaatatgtttttgaagatttttatgggatgtttatgccatttgaattctttaatccgaact 34810407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 775036 - 775135
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactc 179  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||| ||||| || ||  ||||||||||||  |||| | |||| | || |||||||||    
T  775036 taaattccaaaatgtttcaacacgtttt-ggaggtttttatggggtatttattccattcggattctataatctaaactttataggacgcgtgagaaactc 775134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 2917498 - 2917581
Alignment:
Q  68 ctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatc 151  Q
    ||||||||||||||||||||||||| ||| |||  ||||| |   |||||||||| || |||||| |||| ||||| |||||||    
T  2917498 ctatttggattctaaaatccaaaatattttaacacgttttcgagtgtttttatggagtatttatgtcgttcagattatataatc 2917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 19943519 - 19943453
Alignment:
Q  115 ttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactcaa 181  Q
    |||||| || |||||||||||||| ||||||||||||| ||||   |||| |||||||||| |||||    
T  19943519 ttttataggttgtttatgccgtttggattctataatccaaactgcataggacacgcgagaatctcaa 19943453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 45203216 - 45203266
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    |||||| |||||||||||||| |||| |||||| |||||||| ||||||||    
T  45203216 cctattcggattctaaaatccgaaatatttcaatgtgtttttcgaggtttt 45203266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 37865559 - 37865450
Alignment:
Q  49 ctattagtttctcttgtgcc-tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctat 147  Q
    |||| |||||||| |||||| |||| ||||| ||||||   |||||| ||| ||||||||||||||||||   |||||||||||| |||| |||||||||    
T  37865559 ctatgagtttctcatgtgccctattcggattttaaaatttgaaatgtctcagcgtgtttttggaggttttatgggggtgtttatgtcgttcagattctat 37865460  T
Q  148 aatccgaact 157  Q
    ||||||||||    
T  37865459 aatccgaact 37865450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 48400944 - 48401012
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgt 136  Q
    |||||| |||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||    
T  48400944 cctattcggattctaaaatccgaaatgttttaacgtg-ttttggaggtttttatagggtgtttatgccgt 48401012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 31578049 - 31577999
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31578049 cctatttggattctaaaatccgaaatatttcaacgtgtttttggaggtttt 31577999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 23404921 - 23405020
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactc 179  Q
    |||||||| ||| |||||||| |||||||||| | ||| ||||||| ||||||||||||  |||||||| |||||| ||| |||||| ||||| ||||||    
T  23404921 taaaatccgaaacgtttcaacatgtttttggaagattt-atggggtttttatgccgtttgaattctatattccgaaatatatagggcgcgcgaaaaactc 23405019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 2749261 - 2749180
Alignment:
Q  70 atttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatcc 152  Q
    |||| ||||||||||||| |||||||||||| || ||||||||||||||||||||  ||||||  |||  |||||||||||||    
T  2749261 atttagattctaaaatccgaaatgtttcaacttg-ttttggaggtttttatggggcatttatggtgttcggattctataatcc 2749180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 35814602 - 35814550
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatg 121  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||| ||||||    
T  35814602 tattcggattctaaaatccaaaatgttttaacgtgtttttgaaggtgtttatg 35814550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 563854 - 563936
Alignment:
Q  98 aacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaactcaa 181  Q
    |||||||||||| ||| |||||| ||||||||||| | |||| |||||||||| |||||| | |||| | ||||||||||||||    
T  563854 aacgtgtttttg-aggattttatagggtgtttatgtcatttaaattctataattcgaactgtataggtcgcgcgagaaactcaa 563936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 5820189 - 5820128
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtt 137  Q
    ||||||||||||||||||||||||| ||||||   |||||||||||  ||||| ||||||||    
T  5820189 attctaaaatccaaaatgtttcaacatgttttcaaaggtttttatgttgtgttcatgccgtt 5820128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 46939978 - 46940087
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggc 166  Q
    |||||| | |||||||||||  |||||||||||  |||||||| |||| ||||| |  ||||||||  |||  |||||||||||||||||| | ||||||    
T  46939978 cctattcgaattctaaaatctgaaatgtttcaatatgtttttgaaggtctttatagattgtttatgttgttcggattctataatccgaactgtatagggc 46940077  T
Q  167 acgcgagaaa 176  Q
     || ||||||    
T  46940078 gcgtgagaaa 46940087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 32556539 - 32556468
Alignment:
Q  105 ttttggaggtttttatggggtgtttatgccgtttagattctataatccgaactatgtagggcacgcgagaaa 176  Q
    ||||||||||||||||| |||  |||| |||||| |||| |||||||||||| |  |||||| |||||||||    
T  32556539 ttttggaggtttttatgaggtaattataccgtttggattatataatccgaacaaaatagggcgcgcgagaaa 32556468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 30527757 - 30527700
Alignment:
Q  94 tttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatcc 152  Q
    |||||||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  30527757 tttcaacgtgtttttggagg-ttttatgggttttttatgccgttcggattctaaaatcc 30527700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 31767989 - 31767947
Alignment:
Q  67 cctatttggattctaaaatccaaaatgtttcaacgtgtttttg 109  Q
    |||||||||||| |||||||| |||| ||||||||||||||||    
T  31767989 cctatttggattttaaaatccgaaatatttcaacgtgtttttg 31767947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 7439141 - 7439100
Alignment:
Q  76 attctaaaatccaaaatgtttcaacgtgtttttggaggtttt 117  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  7439141 attctaaaatctaaaatatttcaacgtgtttttgaaggtttt 7439100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 10308270 - 10308233
Alignment:
Q  69 tatttggattctaaaatccaaaatgtttcaacgtgttt 106  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  10308270 tatttagattctaaaatccaaaatatttcaacgtgttt 10308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 125 - 49
Alignment:
Q  80 taaaatccaaaatgtttcaacgtgtttttggaggtttttatggggtgtttatgccgtttagattctataatccgaact 157  Q
    |||||||  |||| ||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  125 taaaatctgaaatatttaaacgtgttttag-aggtttttatggggtgtttatgccgtttggattctataattcgaact 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 16272 - 16318
Alignment:
Q  75 gattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatg 121  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||||||||    
T  16272 gattctaaaatcaaaaatattttaacgtgtttttagaggtttttatg 16318  T

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