View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_70 (Length: 327)
Name: NF14307_low_70
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 1458928 - 1458645
Alignment:
| Q |
21 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
120 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1458928 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
1458829 |
T |
|
| Q |
121 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1458828 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccagatt |
1458729 |
T |
|
| Q |
221 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1458728 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatcc |
1458645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 2428635 - 2428352
Alignment:
| Q |
21 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
120 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2428635 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
2428536 |
T |
|
| Q |
121 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2428535 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagatt |
2428436 |
T |
|
| Q |
221 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2428435 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatcc |
2428352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 2431613 - 2431358
Alignment:
| Q |
21 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgcatgct |
118 |
Q |
| |
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|||| |||||||||||| | ||| ||| ||| ||||||||||||||||| |||| || ||||| || | || ||||||||||||||||| |||| |
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| T |
2431613 |
atggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
2431514 |
T |
|
| Q |
119 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccaga |
218 |
Q |
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|||||||| | | || || || |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
2431513 |
caattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
2431417 |
T |
|
| Q |
219 |
ttctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagta |
277 |
Q |
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||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||| |
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| T |
2431416 |
ttctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagta |
2431358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 280
Target Start/End: Complemental strand, 2434943 - 2434740
Alignment:
| Q |
74 |
taccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagt |
173 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || || || ||| |||||||||||||||||||||||||| |
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| T |
2434943 |
taccaagaattccggtataataggaaagtgggacatcattgtgctcaattttgaaaa---ttccagttgtaggaaccaaactatactcttcccatttagt |
2434847 |
T |
|
| Q |
174 |
cattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagtt |
273 |
Q |
| |
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| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||| |
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| T |
2434846 |
aagactccaaactgaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagtt |
2434747 |
T |
|
| Q |
274 |
agtagct |
280 |
Q |
| |
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||||||| |
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| T |
2434746 |
agtagct |
2434740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 2498021 - 2498204
Alignment:
| Q |
53 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
152 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| |
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| T |
2498021 |
aaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
2498120 |
T |
|
| Q |
153 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
236 |
Q |
| |
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|| ||||||||||||||| | |||||||||||||||| ||| |||||||| |||||||| ||||| | ||||||||||| |
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| T |
2498121 |
gctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac |
2498204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 2517831 - 2518014
Alignment:
| Q |
53 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
152 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
2517831 |
aaattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaa |
2517930 |
T |
|
| Q |
153 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
236 |
Q |
| |
|
|| ||||||||||| ||||| | ||||| ||||||||| ||| |||||||| | ||||||||||| |||||||||||||| |
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| T |
2517931 |
gctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
2518014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 2506970 - 2507137
Alignment:
| Q |
69 |
atacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccat |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| || ||||||| ||| || ||||||||||| |
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| T |
2506970 |
atacatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaa |
2507069 |
T |
|
| Q |
169 |
ttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
236 |
Q |
| |
|
||||| || ||||| |||| |||| ||| |||||||| | ||||||||||| |||||||||||||| |
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|
| T |
2507070 |
ttagttatcccccacactatatcaccttccttataatctttgtgtccagattccacaactttagacac |
2507137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 2513614 - 2513797
Alignment:
| Q |
53 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
152 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |||||||||||||| || ||||| | ||||||||||| ||| ||||||| |||||||||| ||| |
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| T |
2513614 |
aaattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaa |
2513713 |
T |
|
| Q |
153 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
236 |
Q |
| |
|
|| ||||||||||| ||||| || ||||| || | |||| ||| ||||||| | ||||||||||||| |||||||||||| |
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|
| T |
2513714 |
gctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacac |
2513797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 50703468 - 50703557
Alignment:
| Q |
115 |
tgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
205 |
Q |
| |
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||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||| | |||||||||| ||||| ||| |||||||| |
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| T |
50703468 |
tgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataat |
50703557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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