View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_74 (Length: 316)
Name: NF14307_low_74
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 37405893 - 37406192
Alignment:
| Q |
1 |
agtggagaagcaaaggcaccctgcagaggttgttgttgctttctatgtaatatttgtaattcatctttggaacatgggaaatcaagggaaaactgcctgg |
100 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37405893 |
agtggagaaacaaaagcaccctgcagaggttgttgttgctttctatgtaatatttgtaattcagctttggaacatgggaaatcaagggaaaactgcctgg |
37405992 |
T |
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| Q |
101 |
ttggttccgtgnnnnnnntcggaagcaaattgttcaaacttgacaattcaaataaaaatggaaattttcttggttggtcatcatcaccatctccttcaat |
200 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37405993 |
ttggttcggtgaaaaaaatcggaagcaaattgttcaaacttgacaattcaaataaaaatggaaattttcttggttggtcatcatcaccatctccttcaat |
37406092 |
T |
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| Q |
201 |
tgcattcccctcatcttttccaagaagatataacaagcgtgccgttctctgtggagtttcttattcaacaagaaaattcaggcttaagggaaccattaat |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37406093 |
tgcatttccctcatcttttccaagaagatataacaagcgtgccgttctctgtggagtttcttattcaacaagaaaattcaggcttaagggaaccattaat |
37406192 |
T |
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