View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_low_8 (Length: 654)
Name: NF14307_low_8
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 53 - 640
Target Start/End: Original strand, 26257401 - 26257991
Alignment:
| Q |
53 |
ggtcacaagtactatggtttgaccatcttaagataataaagttctgattatggttcataattgctccatatgcatatacatttagcataacatgtaaact |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26257401 |
ggtcacaagtactatggtttgatcatcttaagataatatagttctgattatggttcataattgctccatatgcatatacatttagcataacatgtaa-ct |
26257499 |
T |
|
| Q |
153 |
acaactttattatttccatttgagaaactat----ctatacctatctagaaccacataataaatttttcactcaacaactcataattctaaggaaaggaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26257500 |
acaactttattatttccatttgagaaactacgtacctatacctatctagaagcacataataaatttttcactcaacaactcataattctaaggaaaggaa |
26257599 |
T |
|
| Q |
249 |
aactcttcactaccaggatgcagaagcacaccttcaattagcataaaaaagtcaatagtcatgacaagaaagactaaagcatatgatagcttttattttg |
348 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26257600 |
aactcttcactaccaggatgcagaaccacaccttcaattagcataaaaaagtcaatagtcatgacaagaaagactaaagcatataatagcttttattttg |
26257699 |
T |
|
| Q |
349 |
aagtagaaaacagaaggtaaattccaatgtcagtagcagattttatgccaaaaagaaagttactttttgtccaaagtaagtgcatgtttgaattggctgc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26257700 |
aagtagaaaacagaaggtaaattccaatgtcagtagccgattttttgccaaaaagaaagttactttttgtccaaagtaagggcatgtttgaattggctgc |
26257799 |
T |
|
| Q |
449 |
aaatgaaaccttgcgcgtatccttctgcatatgcttgtgcacatccttgcgcgtatgctcgtgcatagccttgagcatatgcttgcgtgtttgcttgtgt |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26257800 |
aaatgaaaccttgcgcgtatccttctgcatatgcttgtgcacatccttgcgcgtatgctcgtgcatagccttgagcatatgcttgcgcgtttgcttgttc |
26257899 |
T |
|
| Q |
549 |
atagccttttgcatttgcttgcgcatatgtgcgtgcatatcctttctcatatgcttgtgcataggctttctcatatgcattgcttttttctg |
640 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26257900 |
atagccttttgcatttgcttgcgcatatgcacgtgcatagcctttctcatatgcttgtatataggctttctcatatgcattgcttttttctg |
26257991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University