View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_86 (Length: 276)
Name: NF14307_low_86
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 957073 - 956955
Alignment:
| Q |
142 |
agcagaaagagtgtacttggcatacattaagtctgattgattcggtttctctcctaaacatcacaaagaaccaagggcatgataacatttgatttgttca |
241 |
Q |
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|||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
957073 |
agcaaaaagagtgtactttgcatacattagctctgattgattcggtttctctcctaaacatcacaaagaaccaagggattgataacatttgatttgttca |
956974 |
T |
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| Q |
242 |
cttcgcaatttatagttaa |
260 |
Q |
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| T |
956973 |
cttcgcaatttatagttaa |
956955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 957137 - 957067
Alignment:
| Q |
43 |
ccaacatttgaaaccttgccaaaaaccattttaaggtttaaaacatatccatatcatctaggatagcaaaa |
113 |
Q |
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| T |
957137 |
ccaacatttgaaaccttgccaacaaccattttaaggtttaaaacatatccatatcatctaggatagcaaaa |
957067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 1028306 - 1028175
Alignment:
| Q |
3 |
ttaacattgatatgaaaatcttgcaaccaacattaacactccaacatttgaaaccttgccaaaa-accattttaaggtttaaaacatatccatatcatct |
101 |
Q |
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|||||||||| ||| |||||||||||| || | || |||| |||||||| ||||||| | || | ||||||||||||| |||||||| ||||||| || |
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| T |
1028306 |
ttaacattgacatgcaaatcttgcaacaaatactagcacttcaacatttaaaacctttcaaacataccattttaaggtgtaaaacatt--catatcagct |
1028209 |
T |
|
| Q |
102 |
aggatagcaaaatttatgcagaagaagtctcaaa |
135 |
Q |
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| T |
1028208 |
aggatagcaaaatttatgcggaaaaagtctcaaa |
1028175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 990298 - 990176
Alignment:
| Q |
18 |
aaatcttgcaaccaacattaacactccaacatttgaaaccttgccaa-aaaccattttaaggtttaaaacatatccatatcatctaggatagcaaaattt |
116 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| |||| | || | |||||||| |||| || | | ||||| | || |||||||||||| |
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| T |
990298 |
aaatcttgcaaccaatagtaacactccaacatttgaaacctttccaacatactgtgttaaggttcaaaatattttcttatcagcaagaatagcaaaattt |
990199 |
T |
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| Q |
117 |
atgcagaagaagtctcaaaacta |
139 |
Q |
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|||||||| |||| ||||||||| |
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| T |
990198 |
atgcagaaaaagtttcaaaacta |
990176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1014817 - 1014776
Alignment:
| Q |
18 |
aaatcttgcaaccaacattaacactccaacatttgaaacctt |
59 |
Q |
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| T |
1014817 |
aaatcttgcaaccaacattaacacgccaacattcaaaacctt |
1014776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 7341094 - 7341130
Alignment:
| Q |
18 |
aaatcttgcaaccaacattaacactccaacatttgaa |
54 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |
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| T |
7341094 |
aaatcttgcaaccaacattaacactacaatatttgaa |
7341130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 22671556 - 22671690
Alignment:
| Q |
3 |
ttaacattgatatgaaaatcttgcaaccaacattaacactccaacatttgaaaccttgccaaaa-accattttaaggtttaaaacatatccatatcatct |
101 |
Q |
| |
|
|||||| ||| ||| |||||||||||| || | || |||| |||||||||||||||| | || | ||||||||||||| |||||| | ||||||| || |
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| T |
22671556 |
ttaacaatgacatggaaatcttgcaacaaatactagcacttcaacatttgaaacctttcaaacataccattttaaggtgtaaaacttt--catatcagct |
22671653 |
T |
|
| Q |
102 |
aggatagcaaaatttatgcagaagaagtctcaaaact |
138 |
Q |
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||||||| ||||||||||| ||| ||||||||||||| |
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| T |
22671654 |
aggatagaaaaatttatgcggaaaaagtctcaaaact |
22671690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 19728674 - 19728566
Alignment:
| Q |
30 |
caacattaacactccaacatt-tgaaaccttgccaa-aaaccattttaaggtttaaaacatatccatatcatctaggatagcaaaatttatgcagaagaa |
127 |
Q |
| |
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||||||||||||||| ||||| ||||||| |||| | ||||| ||||||| |||||||||| ||||||| |||| ||||||| |||||||||| | |
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| T |
19728674 |
caacattaacactccgacattccaaaacctttccaacataccatgttaaggtctaaaacatattcatatcagaaaggagagcaaaacttatgcagaaaat |
19728575 |
T |
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| Q |
128 |
gtctcaaaa |
136 |
Q |
| |
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||||||||| |
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| T |
19728574 |
gtctcaaaa |
19728566 |
T |
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