View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_88 (Length: 270)
Name: NF14307_low_88
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 48706407 - 48706243
Alignment:
| Q |
46 |
aaacacaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatgtgaaattg |
145 |
Q |
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| T |
48706407 |
aaacacaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatatgaaattg |
48706308 |
T |
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| Q |
146 |
taccattagcaaaacactctccgacaaaacatcagctgtcaatgaactctgtatattttattgtc |
210 |
Q |
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| T |
48706307 |
taccattagcgaaacactctccgacaaaacattagctatcaatgaactctgtatattttattgtc |
48706243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 48709785 - 48709670
Alignment:
| Q |
50 |
acaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatgtgaaattgtacc |
149 |
Q |
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| T |
48709785 |
acaagaagaaattaaaagggaggtatcaccttaagtattattcgatactttctctcaattttcataaactcacaggttttcaaacatatgagtccgtacc |
48709686 |
T |
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| Q |
150 |
attagcaaaacactct |
165 |
Q |
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| T |
48709685 |
attagcagaacactct |
48709670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 48698406 - 48698325
Alignment:
| Q |
50 |
acaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttga |
131 |
Q |
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||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
48698406 |
acaagaagaaattacaaaggtattatcaccttaagtattgttcaatacactctttcaattttcgtaaactcgcaggttttga |
48698325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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