View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_90 (Length: 260)
Name: NF14307_low_90
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 68 - 247
Target Start/End: Complemental strand, 45416098 - 45415919
Alignment:
| Q |
68 |
ttaacgaaaatcatgtgcaattgagtgaaaaatacagtgtcgtgcatttcgtgcgcgttgtttgctttgtaacaaacaagtaaaattgtccatctaagtg |
167 |
Q |
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| T |
45416098 |
ttaacgaaaatcatgtgaaattgggtgaaaaatacagtgtcgtgcatttcgtgcgcgttgtttgctttgtaacaaacaagtaaaattgtccatctaagcg |
45415999 |
T |
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| Q |
168 |
ctacataagtataatttcttgactcttgttgattttggaattaattattgtttgtttttgttgattattactatcacttc |
247 |
Q |
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| T |
45415998 |
ctacataagtataatttcttgactcttgttgattttggaattaattattgtttgttcttgttgattattaatatcacttc |
45415919 |
T |
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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 15441923 - 15441999
Alignment:
| Q |
68 |
ttaacgaaaatcatgtgcaattgagtgaaaaatacagtgtcgtgcatttcgtgcgcgttgtttgctttgtaacaaaca |
145 |
Q |
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| T |
15441923 |
ttaacggaaatcatgtgcaattgagtgaaaa-tacactgtcgtgcctttcatgcgtgttgtttgctttgtaataaaca |
15441999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 40359961 - 40359909
Alignment:
| Q |
19 |
attcgtacacatttgacgacaaattttgtcgtgcatttcatcatttcccttaa |
71 |
Q |
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| T |
40359961 |
attcgtgcatatttgacgacaaatattatcgtgaatttcatcattttccttaa |
40359909 |
T |
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