View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14307_low_93 (Length: 252)
Name: NF14307_low_93
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_93 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7638895 - 7638674
Alignment:
| Q |
1 |
aaagagacattaacgttagtttaacgttgcaggttacgttacgttagataatatattatacacgcacaattgcatttagatttttgtgtgttgtggaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7638895 |
aaagagacattaacgttagtttaacgttgcaggttacgttacgttagata------------cgcacaattgcatttagatttttgtgtgttgtggaatg |
7638808 |
T |
|
| Q |
101 |
attctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatagggcaaaatcttcatggtaaataaaattgattttgtaatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7638807 |
attctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatatggcaatatcttcatggtaaataaaattgattttgtaatag |
7638708 |
T |
|
| Q |
201 |
gtagaatttaaaactattattaattgttgaattt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7638707 |
gtagaatttaaaactattattaattgttgaattt |
7638674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 7632028 - 7631889
Alignment:
| Q |
55 |
attatacacgcacaattgcatttagatttttgtgtgttgtggaatgattctgacataaaaaacaaagttcaatagattcgaaaacact--ttgtgtttga |
152 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||| ||| | |||||||| |||| |||||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
7632028 |
attatacactcacgattacatttagatttttgtgcgttataaaatgattccgacagaaaaaacaaagttcaatagacttgaaaacacttcttgtgtttga |
7631929 |
T |
|
| Q |
153 |
atgaatagggcaaaatcttcatggtaaataaaattgattttg |
194 |
Q |
| |
|
|| ||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
7631928 |
ataaat--ggcaaaatcttattgataaataaaattgattttg |
7631889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University