View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14307_low_99 (Length: 245)
Name: NF14307_low_99
Description: NF14307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14307_low_99 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 42883695 - 42883831
Alignment:
| Q |
8 |
tcagcaatcttgatgatgttgacaatatcatggatgagatcactgaacagacagagaagatgagacaggttcaggaagcattgtcagctccaattggccc |
107 |
Q |
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| T |
42883695 |
tcagcaatcttgatgatgttgacaatatcatggatgagatcactgaacagacagagaagatgagacaggttcaggaagcattgtcagctccaattggccc |
42883794 |
T |
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| Q |
108 |
agccgactatgatgaggttgtcttctcaactgttaat |
144 |
Q |
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| T |
42883795 |
agccgactatgatgaggttgtcttctcaactgttaat |
42883831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 42889611 - 42889527
Alignment:
| Q |
20 |
atgatgttgacaatatcatggatgagatcactgaacagacagagaagatgagacaggttcaggaagcattgtcagctccaattgg |
104 |
Q |
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| T |
42889611 |
atgatgttgacgcaaccatggatgagattaatgaacagactgagaacatgaaacagattcaggaattattgtcagctccaattgg |
42889527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 34405982 - 34406078
Alignment:
| Q |
8 |
tcagcaatcttgatgatgttgacaatatcatggatgagatcactgaacagacagagaagatgagacaggttcaggaagcattgtcagctccaattgg |
104 |
Q |
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| T |
34405982 |
tcaggaatattgatgatgtcgacaagaccatggacgagataaatgaacagaccgagaacatgaagcagattcaagaagcattgtcggctccaattgg |
34406078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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