View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_high_2 (Length: 766)
Name: NF14308_high_2
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 15 - 750
Target Start/End: Original strand, 51413356 - 51414082
Alignment:
| Q |
15 |
catagggaaagcattgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtat |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51413356 |
catagggaaagcattgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtat |
51413455 |
T |
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| Q |
115 |
cagttcagttgtagtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccggccaaggaggatggtcgccggc |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51413456 |
cagttcagctgtagtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccggccaaggaggatggtcgccggc |
51413555 |
T |
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| Q |
215 |
aaatgaaggtgtgtcgcggcaatgaaaggaggcgcgtgaagatgacaactttgtctagggagacagaaaaggagaaagagtttcatgttgaccaggcggc |
314 |
Q |
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| T |
51413556 |
aaatgaaggtgtgtcgcggcaatgaaaggaggcgcgtgaagatgacaactttgtctagggagacagaaaaggagaaagagtttcatgttgaccaggcggc |
51413655 |
T |
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| Q |
315 |
ggaagagttcatagaaaagttttacagagaattgaggttgcagaaatggttggatcatcatcaacatcaacatcaacatcactattaatgctgacgtgtc |
414 |
Q |
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| T |
51413656 |
ggaagagttcatagaaaagttttacagagaattgaggttgcagaaatggttggatcatcatcaacatcaacatcaacatcactattaatgctgacgtgtc |
51413755 |
T |
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| Q |
415 |
ctgtgtatttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgtttctgaggctctctctttgaatctc |
514 |
Q |
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| T |
51413756 |
ctgtgtgtttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgcttctgaggctctctctttgaatctc |
51413855 |
T |
|
| Q |
515 |
tgtactatgtatatgttatgttaatgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaattgttttcttttcgtactgta |
614 |
Q |
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| T |
51413856 |
tgtactatgtatatgtt------atgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaattgttttcttttcgtactgta |
51413949 |
T |
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| Q |
615 |
gtgttgttatgct---atcaacaaagctagcttctttcactttactattactacgtttatttcaattaccttccctttctaaattcaaatggttaatcac |
711 |
Q |
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| T |
51413950 |
gtgttgttatgctatcatcaacaaagctagcttctttcact------ttactacgtttatttcaattaccttccctttctaaattcaactggttaatcac |
51414043 |
T |
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| Q |
712 |
tcttttgctaacnnnnnnntaagaattaatatgttttgt |
750 |
Q |
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| T |
51414044 |
tcttttgctaacaaaaaaataagaattaatatgttttgt |
51414082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 51418409 - 51418584
Alignment:
| Q |
15 |
catagggaaagcattgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtat |
114 |
Q |
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| T |
51418409 |
catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtattttatttcaccgttggagtat |
51418508 |
T |
|
| Q |
115 |
cagttcagttgtagtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccgg |
193 |
Q |
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| T |
51418509 |
cagttcagctgtagcagcagtccaccgcgtctctctc---gtggtgcaaacagtagtaggaggaagctattatctccgg |
51418584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 51418698 - 51418763
Alignment:
| Q |
310 |
gcggcggaagagttcatagaaaagttttacagagaattgaggttgcagaaatggttggatcatcat |
375 |
Q |
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| T |
51418698 |
gcggcagaggagttcatagagaggttttacagagagttgaggttgcagaaatggttggatcatcat |
51418763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 51416472 - 51416582
Alignment:
| Q |
85 |
gatatgtatttcatttcaccgttggagtatcagttcagttgtagtagcagtccacctcgtctctctcgcg-gtggcgccagcagtagtaggaggaagctt |
183 |
Q |
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| T |
51416472 |
gatatgtatttcgtttcaccgttggaatatcagttcagctgtagcagcaatccaccgcatctcactcgtgcatggtgcaagcagcagtaggagaaagcta |
51416571 |
T |
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| Q |
184 |
ttgtctccggc |
194 |
Q |
| |
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|| |||||||| |
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| T |
51416572 |
ttatctccggc |
51416582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 29323690 - 29323760
Alignment:
| Q |
46 |
aagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtatca |
116 |
Q |
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| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttcgtttcaccgttggagtatca |
29323760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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