View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14308_high_8 (Length: 302)

Name: NF14308_high_8
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14308_high_8
NF14308_high_8
[»] chr4 (20 HSPs)
chr4 (21-251)||(554747-554977)
chr4 (34-134)||(1596891-1596993)
chr4 (27-117)||(1597707-1597799)
chr4 (183-251)||(5662088-5662156)
chr4 (183-243)||(51400152-51400212)
chr4 (183-251)||(1580043-1580112)
chr4 (183-251)||(35447685-35447753)
chr4 (185-237)||(376193-376245)
chr4 (183-251)||(18419290-18419358)
chr4 (183-251)||(31330059-31330127)
chr4 (183-236)||(1363685-1363738)
chr4 (183-248)||(2133519-2133584)
chr4 (183-251)||(20818218-20818284)
chr4 (183-235)||(9779218-9779270)
chr4 (183-251)||(20702336-20702404)
chr4 (183-247)||(23431669-23431733)
chr4 (183-235)||(35104116-35104168)
chr4 (183-251)||(46196741-46196809)
chr4 (183-251)||(47931365-47931433)
chr4 (183-251)||(50561239-50561307)
[»] chr2 (15 HSPs)
chr2 (21-117)||(41218831-41218928)
chr2 (183-251)||(33676750-33676818)
chr2 (72-119)||(41224472-41224519)
chr2 (185-251)||(39271623-39271689)
chr2 (183-251)||(36080205-36080276)
chr2 (183-251)||(1071173-1071241)
chr2 (183-251)||(24005115-24005182)
chr2 (183-251)||(24100651-24100719)
chr2 (70-117)||(41226040-41226087)
chr2 (183-249)||(4652504-4652570)
chr2 (183-232)||(21925684-21925733)
chr2 (183-251)||(12069424-12069492)
chr2 (183-243)||(13836992-13837052)
chr2 (183-251)||(19813912-19813979)
chr2 (183-251)||(41014252-41014319)
[»] chr3 (18 HSPs)
chr3 (183-251)||(5492508-5492576)
chr3 (183-251)||(4577847-4577915)
chr3 (181-251)||(26977968-26978038)
chr3 (183-251)||(796428-796496)
chr3 (185-233)||(15522480-15522528)
chr3 (183-251)||(22102400-22102468)
chr3 (183-251)||(22177348-22177416)
chr3 (183-251)||(50098990-50099057)
chr3 (185-248)||(51006153-51006216)
chr3 (193-251)||(14418970-14419028)
chr3 (185-251)||(45644103-45644169)
chr3 (183-243)||(3418772-3418832)
chr3 (183-243)||(3890228-3890288)
chr3 (183-235)||(7430043-7430095)
chr3 (183-251)||(25842320-25842388)
chr3 (183-251)||(30102564-30102632)
chr3 (185-251)||(38358635-38358698)
chr3 (183-251)||(40360304-40360372)
[»] chr7 (14 HSPs)
chr7 (185-251)||(31283501-31283567)
chr7 (183-251)||(19371705-19371773)
chr7 (183-251)||(36609860-36609928)
chr7 (183-251)||(4550290-4550358)
chr7 (183-251)||(25834537-25834605)
chr7 (183-251)||(32883110-32883178)
chr7 (185-251)||(372624-372690)
chr7 (185-235)||(26710283-26710333)
chr7 (183-249)||(45000969-45001035)
chr7 (183-248)||(7628666-7628731)
chr7 (186-243)||(10040393-10040450)
chr7 (183-248)||(25610612-25610677)
chr7 (182-251)||(40417499-40417568)
chr7 (183-251)||(39465807-39465875)
[»] chr1 (27 HSPs)
chr1 (185-251)||(43577512-43577578)
chr1 (183-251)||(11407258-11407326)
chr1 (183-251)||(48419969-48420037)
chr1 (185-251)||(13303925-13303991)
chr1 (183-251)||(773723-773794)
chr1 (185-246)||(24232194-24232255)
chr1 (183-243)||(7548414-7548474)
chr1 (183-251)||(11344919-11344987)
chr1 (183-243)||(29689382-29689442)
chr1 (183-251)||(34969365-34969433)
chr1 (188-243)||(29716899-29716954)
chr1 (183-245)||(1570266-1570328)
chr1 (185-243)||(13057269-13057327)
chr1 (181-251)||(33326790-33326860)
chr1 (185-243)||(48995470-48995528)
chr1 (183-251)||(47402821-47402890)
chr1 (183-251)||(115902-115970)
chr1 (183-251)||(8699261-8699329)
chr1 (183-251)||(10844279-10844347)
chr1 (183-243)||(13315250-13315310)
chr1 (183-251)||(18227001-18227069)
chr1 (183-251)||(25298033-25298101)
chr1 (183-251)||(25822152-25822219)
chr1 (183-251)||(31528615-31528683)
chr1 (183-235)||(43575683-43575735)
chr1 (183-251)||(46880041-46880109)
chr1 (183-251)||(52043358-52043426)
[»] scaffold0118 (1 HSPs)
scaffold0118 (183-251)||(14730-14798)
[»] chr5 (15 HSPs)
chr5 (183-251)||(17210547-17210615)
chr5 (185-243)||(5776547-5776604)
chr5 (183-251)||(1612007-1612075)
chr5 (183-243)||(19650691-19650751)
chr5 (183-251)||(36226448-36226516)
chr5 (183-251)||(38697021-38697089)
chr5 (183-250)||(832163-832230)
chr5 (183-250)||(36267099-36267166)
chr5 (186-236)||(12082987-12083037)
chr5 (185-251)||(24836748-24836814)
chr5 (185-243)||(40716211-40716269)
chr5 (183-251)||(8786729-8786797)
chr5 (183-251)||(19128620-19128688)
chr5 (183-243)||(28766280-28766340)
chr5 (183-251)||(42027669-42027737)
[»] scaffold0445 (1 HSPs)
scaffold0445 (183-249)||(4811-4877)
[»] chr8 (22 HSPs)
chr8 (185-251)||(1554755-1554821)
chr8 (186-251)||(1170488-1170553)
chr8 (186-251)||(4418384-4418449)
chr8 (183-251)||(3739559-3739627)
chr8 (183-235)||(4437874-4437926)
chr8 (183-235)||(33192561-33192613)
chr8 (183-251)||(18918341-18918411)
chr8 (183-222)||(30800645-30800684)
chr8 (183-237)||(38283643-38283697)
chr8 (185-251)||(38498482-38498548)
chr8 (219-251)||(5049702-5049734)
chr8 (183-243)||(11929657-11929717)
chr8 (183-243)||(15872095-15872155)
chr8 (183-251)||(15919571-15919639)
chr8 (183-235)||(24023984-24024036)
chr8 (183-235)||(24688608-24688660)
chr8 (183-251)||(25722779-25722847)
chr8 (183-251)||(27020517-27020585)
chr8 (183-251)||(29684215-29684283)
chr8 (183-235)||(32172985-32173037)
chr8 (183-251)||(34966680-34966748)
chr8 (183-251)||(41942505-41942573)
[»] chr6 (7 HSPs)
chr6 (183-237)||(21104539-21104592)
chr6 (183-251)||(28712008-28712076)
chr6 (183-251)||(31204087-31204155)
chr6 (183-251)||(8771737-8771805)
chr6 (183-251)||(17353087-17353154)
chr6 (184-251)||(20715814-20715882)
chr6 (183-251)||(22535486-22535554)
[»] scaffold0013 (1 HSPs)
scaffold0013 (183-251)||(41569-41638)
[»] scaffold0196 (2 HSPs)
scaffold0196 (183-251)||(8725-8793)
scaffold0196 (183-251)||(8217-8285)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 554977 - 554747
Alignment:
Q  21 agaggcatactagaaactgatacaaacatgaaattataactcaatgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttctgca 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554977 agagacatactagaaactgatacaaacatgaaattataactcaatgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttctgca 554878  T
Q  121 tttatatatctctgataatgaaaatgtatccatagatatttagattgttttttgacaagataactttttcattatcccaattataccattcaatcatttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554877 tttatatatctctgataatgaaaatgtatccatagatatttagattgttttttgacaagataactttttcattatcccaattataccattcaatcatttt 554778  T
Q  221 ttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||||||||||||    
T  554777 ttctagaataaagattggtgttgatgtcatt 554747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 1596993 - 1596891
Alignment:
Q  34 aaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttctgcatttatatatct 131  Q
    ||||||||  ||||||||||||| ||||||   ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  1596993 aaactgatctaaacatgaaattagaactcacagtgtttttgttttctgatatcattctgtcagtaggaaggtagtctcttgtttctgcatttagatatct 1596894  T
Q  132 ctg 134  Q
    |||    
T  1596893 ctg 1596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 1597799 - 1597707
Alignment:
Q  27 atactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttct 117  Q
    |||||||||||||||   |||||||||||| ||||||   ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  1597799 atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttct 1597707  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 5662088 - 5662156
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||| |||||||||||||||| || ||| ||||||| || ||||||||||| |||||||||||||    
T  5662088 actttttcgttatcccaattatacctttaaataattttttatataataaagattgttgttgatgtcatt 5662156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 51400212 - 51400152
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||||||||||||||||| ||| | |||||||| ||||||||||| |||||    
T  51400212 actttttcattatcccaattataccattaaataactttttctataataaagattgttgttg 51400152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1580112 - 1580043
Alignment:
Q  183 actttttcattatcccaattataccattcaa-tcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || || | | |||||||| ||||||||||| |||||||||||||    
T  1580112 actttttcattatcccaattatacctttaaaataactttttctataataaagattgttgttgatgtcatt 1580043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 35447753 - 35447685
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||| | |||||||| ||||||||||| ||||| |||||||    
T  35447753 actttttcattatctcaattatacccttaaataactttttctataataaagattgttgttggtgtcatt 35447685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 376193 - 376245
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattg 237  Q
    ||||||||||||||||||||| | || ||| |||||||||| |||||||||||    
T  376193 tttttcattatcccaattatatctttaaataattttttctataataaagattg 376245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 18419290 - 18419358
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||  |||||||||| || ||  |||||||||| ||||||||| | |||||||||||||    
T  18419290 actttttcattatttcaattatacccttgaacaattttttctataataaagatcgttgttgatgtcatt 18419358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 31330127 - 31330059
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| ||||||||||||||||  || ||| ||||||| || ||||||||||  |||||||||||||    
T  31330127 actttttaattatcccaattatactcttaaataattttttttataataaagattattgttgatgtcatt 31330059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 1363685 - 1363738
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagatt 236  Q
    ||||||| ||||||||||||||||| || ||  |||||||||| ||||||||||    
T  1363685 acttttttattatcccaattatacccttaaacaattttttctaaaataaagatt 1363738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 2133519 - 2133584
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtc 248  Q
    |||||||||||||| |||||||||  || ||  |||||||||| ||||||||||| ||||| ||||    
T  2133519 actttttcattatctcaattatactcttaaacaattttttctataataaagattgttgttggtgtc 2133584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 20818284 - 20818218
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||| ||||||||||||||| || ||  ||||||| ||  |||||||||| |||||||||||||    
T  20818284 actttttcactatcccaattatacccttaaacaattttttata--ataaagattgttgttgatgtcatt 20818218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 9779270 - 9779218
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||||||||||||| || ||  ||||||| || |||||||||    
T  9779270 actttttcattatcccaattatacccttaaacaattttttatataataaagat 9779218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 20702336 - 20702404
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||| ||||||||||| || ||  | |||||||| ||||||||| | ||||| |||||||    
T  20702336 actttttcattattccaattatacccttaaacaactttttctataataaagatcgttgttggtgtcatt 20702404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 23431733 - 23431669
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgt 247  Q
    ||||||| |||||| |||||||||| || ||  |||||||||| |||||||||||  ||||||||    
T  23431733 acttttttattatctcaattatacccttaaacaattttttctataataaagattgtagttgatgt 23431669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 35104168 - 35104116
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||| ||||||||||| |||||  | |||||||| |||||||||    
T  35104168 actttttcattattccaattatacccttcaacaactttttctataataaagat 35104116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 46196741 - 46196809
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||| || || ||  | || ||||| ||||||||||| ||||||| |||||    
T  46196741 actttttcattatcccaattatgcctttaaacaacttattctataataaagattgttgttgatatcatt 46196809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 47931433 - 47931365
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||| |||||||||||||||| || ||  | ||||| || ||||||||||| ||||| |||||||    
T  47931433 actttttctttatcccaattatacccttaaacaactttttatataataaagattgttgttggtgtcatt 47931365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 50561307 - 50561239
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||| | || ||  |||||||||| |||||| |||| ||||| |||||||    
T  50561307 actttttcattatctcaattatatccttaaacaattttttctataataaaaattgttgttggtgtcatt 50561239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 41218831 - 41218928
Alignment:
Q  21 agaggcatactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttct 117  Q
    |||| |||||||||||||||   ||||||||||||  ||||||   |||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  41218831 agagacatactagaaactgacgtaaacatgaaattg-aactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtcttttgtttct 41218928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 33676818 - 33676750
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||| ||||| |||||||    
T  33676818 actttttcattatcccaattatacccttaaacaattttttctataataaagattgttgttggtgtcatt 33676750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 41224472 - 41224519
Alignment:
Q  72 gttttctgatatcattctctcagtaggaagatagtctcttgtttctgc 119  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  41224472 gttttctgatatcattctttcagtaggaagatagtctcttgcttctgc 41224519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 39271689 - 39271623
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||| ||||||||||||||| | || ||| |||||||||| ||||||||||| ||||| |||||||    
T  39271689 ttttttattatcccaattatatccttaaataattttttctataataaagattgttgttggtgtcatt 39271623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 36080205 - 36080276
Alignment:
Q  183 actttttcattatcccaattataccatt---caatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| ||   |||  |||||||||| ||||||||||| ||||| |||||||    
T  36080205 actttttcattatcccaattatacccttaaacaacaattttttctataataaagattgttgttggtgtcatt 36080276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1071241 - 1071173
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||| |||||| ||||||||  || ||  |||||||||| ||||||||||| |||||||||||||    
T  1071241 actttttcgttatcctaattatactcttaaacaattttttctataataaagattgttgttgatgtcatt 1071173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 24005182 - 24005115
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||||||    
T  24005182 actttttcattattccaattatacccttaaat-attttttctataataaagatcgttgttggtgtcatt 24005115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 24100651 - 24100719
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| ||||||||| || ||  || ||||||| ||||||||||| ||||| |||||||    
T  24100651 actttttcattatccaaattatacccttaaacaatattttctataataaagattgttgttggtgtcatt 24100719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 41226040 - 41226087
Alignment:
Q  70 ttgttttctgatatcattctctcagtaggaagatagtctcttgtttct 117  Q
    |||||||||||||| ||||| | ||||||||||||||||| |||||||    
T  41226040 ttgttttctgatatgattctttgagtaggaagatagtctcctgtttct 41226087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 4652570 - 4652504
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtca 249  Q
    ||||||||||||| ||||||||||  || ||  |||||||||  ||||||||||| |||||||||||    
T  4652570 actttttcattattccaattatacacttaaacaattttttctttaataaagattgttgttgatgtca 4652504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 21925684 - 21925733
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaa 232  Q
    ||||||||||||||| ||||||||| || ||| |||||||||| ||||||    
T  21925684 actttttcattatcctaattatacccttaaataattttttctataataaa 21925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 12069424 - 12069492
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| ||||||||  || ||  | |||||||| ||||||||||| ||||| |||||||    
T  12069424 actttttcattatcctaattatactcttaaacaactttttctataataaagattgttgttggtgtcatt 12069492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 13837052 - 13836992
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||||| ||||||||  || ||  |||||||||| ||||||||||| |||||    
T  13837052 actttttcattatccgaattatactcttgaacaattttttctataataaagattgttgttg 13836992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 19813979 - 19813912
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| ||||||||  || ||  |||||||||| ||||||||||| ||||| |||||||    
T  19813979 actttttcattatcc-aattatacacttaaacaattttttctataataaagattgttgttggtgtcatt 19813912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 41014252 - 41014319
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| ||||||| || || || || |||||||| |||||| |||| |||||||||||||    
T  41014252 actttttcattatctcaattatgcctttaaa-caatttttctataataaatattgttgttgatgtcatt 41014319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 5492576 - 5492508
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||||| ||||||||||| |||||||||||||    
T  5492576 actttttcattatcccaattatacctttaaacaactttttctataataaagattgttgttgatgtcatt 5492508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 4577915 - 4577847
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| |||| |||| || ||| |||||||||| ||||||||||| ||||| |||||||    
T  4577915 actttttcattatccaaattctacctttaaataattttttctataataaagattgttgttggtgtcatt 4577847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 26977968 - 26978038
Alignment:
Q  181 taactttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||| |||||||||| || ||| | ||||| || ||||||||||| ||||| |||||||    
T  26977968 taactttttcattatctcaattatacctttaaataaatttttttataataaagattgttgttgctgtcatt 26978038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 796428 - 796496
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||| | ||||| || ||||||||||| ||||  |||||||    
T  796428 actttttcattatcccaattatacctttaaataactttttatataataaagattgttgtttgtgtcatt 796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 15522480 - 15522528
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaag 233  Q
    ||||||||||||||||||||||| || ||| |||||||||| |||||||    
T  15522480 tttttcattatcccaattatacctttaaataattttttctataataaag 15522528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 22102400 - 22102468
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||| | ||||||||||| ||||| |||||||    
T  22102400 actttttcattatcccaattatacccttaaacaactttttccataataaagattgttgttggtgtcatt 22102468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 22177348 - 22177416
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||| | ||||||||||| ||||| |||||||    
T  22177348 actttttcattatcccaattatacccttaaacaactttttccataataaagattgttgttggtgtcatt 22177416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 50098990 - 50099057
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  50098990 actttttcattatcccaattatacc-ttaaacaactttttctataataaagattgttgttggtgtcatt 50099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 51006153 - 51006216
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtc 248  Q
    |||||||||||| |||||||||  || ||| |||||||||| ||||||||||| ||||| ||||    
T  51006153 tttttcattatctcaattatactcttaaataattttttctataataaagattgttgttggtgtc 51006216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 14418970 - 14419028
Alignment:
Q  193 tatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||| |||||||||| || ||  |||||||||| ||||||||||| |||||||||||||    
T  14418970 tatctcaattatacccttaaacaattttttctataataaagattgttgttgatgtcatt 14419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 45644103 - 45644169
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||| || ||  | |||||||| |||||||||||  |||| |||||||    
T  45644103 tttttcattatcccaattatacccttaaacaactttttctataataaagattgtcgttggtgtcatt 45644169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 3418772 - 3418832
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||| ||||||||||| || ||  | |||||||| ||||||||||| |||||    
T  3418772 actttttcattattccaattatacccttaaacaactttttctataataaagattgttgttg 3418832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 3890288 - 3890228
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||| |||||    
T  3890288 actttttcattatctcaattatacccttaaacaactttttctacaataaagattgttgttg 3890228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 7430095 - 7430043
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||| |||||||||||||||||||| ||  | |||||||| |||||||||    
T  7430095 acttttttattatcccaattataccattaaacaactttttctataataaagat 7430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 25842320 - 25842388
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||| |  |||| || ||||||||| | ||||||| |||||    
T  25842320 actttttcattatcccaattatacccttaaataaccttttatataataaagatcgttgttgatatcatt 25842388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 30102632 - 30102564
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||| | ||||| |||||||    
T  30102632 actttttcattatctcaattatacccttaaacaactttttctataataaagatcgttgttggtgtcatt 30102564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 38358635 - 38358698
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||||||| ||  | |||||||   |||||||||| ||||| |||||||    
T  38358635 tttttcattatcccaattataccattaaacaactttttct---ataaagattgttgttggtgtcatt 38358698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 40360304 - 40360372
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| | ||||| | || ||  |||||||||| ||||||||||| ||||| |||||||    
T  40360304 actttttcattatccaagttatatccttaaacaattttttctataataaagattgttgttggtgtcatt 40360372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 31283567 - 31283501
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||| ||| ||  |||||||||| ||||||||||| ||||| |||||||    
T  31283567 tttttcattatcccaattatactattaaacaattttttctataataaagattgttgttggtgtcatt 31283501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 19371705 - 19371773
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  19371705 actttttcattatcccaattatacccttaaacaactttttctataataaagattgttgttggtgtcatt 19371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 36609928 - 36609860
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  |||||||||| ||||||||||| ||||| |||||||    
T  36609928 actttttcattatctcaattatacccttaaacaattttttctataataaagattgttgttggtgtcatt 36609860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 4550290 - 4550358
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||  |||||||||| || ||  ||||||| || ||||||||||| |||||||||||||    
T  4550290 actttttcattatatcaattatacccttaaacaattttttatataataaagattgttgttgatgtcatt 4550358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 25834537 - 25834605
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| || ||||||| || ||  |||||| ||| ||||||||||| |||||||||||||    
T  25834537 actttttcattatctcatttatacccttaaacaatttttcctataataaagattgttgttgatgtcatt 25834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 32883110 - 32883178
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||| ||||||||||||||||| ||  |||||||||| |||||| |||| | ||| |||||||    
T  32883110 actttttcatcatcccaattataccattaaacaattttttctataataaatattgtttttgttgtcatt 32883178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 372624 - 372690
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||| |||| || ||  |||||||||| ||| ||||||| ||||||| |||||    
T  372624 tttttcattatcccaattctacctttaaacaattttttctataatgaagattgttgttgatatcatt 372690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 26710333 - 26710283
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||||||||||  || ||| |||||||||| |||||||||    
T  26710333 tttttcattatcccaattatacacttaaataattttttctataataaagat 26710283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 45001035 - 45000969
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtca 249  Q
    ||||||| |||||| |||||||||| || ||  | |||||||| ||||||||||| |||||||||||    
T  45001035 acttttttattatctcaattatacccttaaacaactttttctataataaagattgttgttgatgtca 45000969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 7628666 - 7628731
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtc 248  Q
    |||||| |||||||| ||||||| |||| ||  | |||||||| ||||||||||| ||||||||||    
T  7628666 acttttacattatcctaattatatcattaaacaactttttctataataaagattgttgttgatgtc 7628731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 10040393 - 10040450
Alignment:
Q  186 ttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||||| |||||| || ||  |||||||||| ||||||||||| |||||    
T  10040393 ttttcattatcccaactataccgttaaacaattttttctataataaagattgttgttg 10040450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 25610677 - 25610612
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtc 248  Q
    |||||||| ||||| |||||||||| || ||  | |||||||| ||||||||||| ||||||||||    
T  25610677 actttttcgttatctcaattatacccttaaacaactttttctataataaagattgttgttgatgtc 25610612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 40417499 - 40417568
Alignment:
Q  182 aactttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||| |||||||||| ||||||||||| ||  |||||||||| |||||| |||| | ||| |||||||    
T  40417499 aactttatcattatccctattataccattaaacaattttttctataataaaaattgttcttggtgtcatt 40417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 39465807 - 39465875
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || | | | ||||| || |||||| |||| ||||| |||||||    
T  39465807 actttttcattatcccaattatacccttaagtaactttttttataataaaaattgttgttggtgtcatt 39465875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 43577578 - 43577512
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||| || ||| |||||||||| ||||||||||| || |||| |||||    
T  43577578 tttttcattatcccaattatacccttaaataattttttctataataaagattgttgctgatttcatt 43577512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 11407258 - 11407326
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  |||| ||||||||||||||| | ||| |||||||||    
T  11407258 actttttcattatcccaattatacccttaaacaatttattctagaataaagatcgttgtcgatgtcatt 11407326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 48419969 - 48420037
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||||||||| ||  | |||||||| ||||||||| | ||||| |||||||    
T  48419969 actttttcattatcccaattataccattaaacaactttttctataataaagatcgttgttggtgtcatt 48420037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 13303925 - 13303991
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  13303925 tttttcattatcccaattatacctttaaacaactttttctataataaagattgttgttggtgtcatt 13303991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 773723 - 773794
Alignment:
Q  183 actttttcattatcccaattataccatt---caatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| ||   |||| |||||||||| |||||||| || ||||| |||||||    
T  773723 actttttcattatcccaattatacccttaaacaataattttttctataataaagactgttgttggtgtcatt 773794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 24232194 - 24232255
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatg 246  Q
    ||||||||||||||||||||||| || ||  |||||||||| |||||| |||| ||||||||    
T  24232194 tttttcattatcccaattatacccttaaacaattttttctataataaaaattgttgttgatg 24232255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 7548414 - 7548474
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||| ||||||||||||||| || ||  |||||||||| ||||||||||| |||||    
T  7548414 actttttcactatcccaattatacccttaaacaattttttctataataaagattgttgttg 7548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 11344919 - 11344987
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||  || ||  | |||||||| ||||||||||| ||||| |||||||    
T  11344919 actttttcattatcccaattatactcttaaacaactttttctataataaagattgttgttggtgtcatt 11344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 29689382 - 29689442
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||| |||||||||| || ||  |||||||||| ||||||||||| |||||    
T  29689382 actttttcattatctcaattatacccttaaacaattttttctataataaagattgttgttg 29689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 34969433 - 34969365
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||| ||||||||||  || ||  |||||||||| ||||||||||| ||||| |||||||    
T  34969433 actttttcattattccaattatactcttaaacaattttttctataataaagattgttgttggtgtcatt 34969365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 29716899 - 29716954
Alignment:
Q  188 ttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||||||||| || ||  |||||||||| ||||||||||| |||||    
T  29716899 ttcattatcccaattatacccttaaacaattttttctataataaagattgttgttg 29716954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 1570328 - 1570266
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgat 245  Q
    ||||||||||||||| ||||||| | || ||  |||||||||| ||||||||||| |||||||    
T  1570328 actttttcattatcctaattatatccttaaacaattttttctataataaagattgttgttgat 1570266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 13057327 - 13057269
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||| |||||| |||||||||| || ||| |||||||||| ||||||||||| |||||    
T  13057327 ttttttattatctcaattatacctttaaataattttttctataataaagattgttgttg 13057269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 33326860 - 33326790
Alignment:
Q  181 taactttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||||  || ||  | |||||||| |||||| |||| ||||| |||||||    
T  33326860 taactttttcattatcccaattatactcttaaacaactttttctataataaatattgttgttggtgtcatt 33326790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 48995528 - 48995470
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||| ||| ||||||| || ||| |||||||||| ||||||||||| |||||    
T  48995528 tttttcattattccagttatacccttaaataattttttctataataaagattgttgttg 48995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 47402890 - 47402821
Alignment:
Q  183 actttttcattatcccaattataccatt-caatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| ||  ||| ||||||| || ||||||||||| | ||| |||||||    
T  47402890 actttttcattatcccaattatacccttaaaataattttttatataataaagattgtttttgttgtcatt 47402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 115970 - 115902
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||| |||| ||  | ||||| || ||||||||||| ||||| |||||||    
T  115970 actttttcattatctcaattatatcattaaacaactttttatataataaagattgttgttggtgtcatt 115902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 8699261 - 8699329
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| ||| |||||||| ||    |||||||| ||||||||||| ||||| |||||||    
T  8699261 actttttcattatcctaatcataccattaaacacctttttctataataaagattgttgttggtgtcatt 8699329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 10844347 - 10844279
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||| ||||||| | || ||  |||||||||| ||||||||  | |||||||||||||    
T  10844347 actttttcattatcctaattatatccttaaacaattttttctataataaagaacgttgttgatgtcatt 10844279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 13315310 - 13315250
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||||||| |||||| || ||  | |||||||| ||||||||||| |||||    
T  13315310 actttttcattatcccaagtatacccttaaacaactttttctataataaagattgttgttg 13315250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 18227069 - 18227001
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| || |||||||| |||||| ||||||    
T  18227069 actttttcattatctcaattatacctttaaacaactttttctataacaaagattgttgttgacgtcatt 18227001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 25298033 - 25298101
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||| | ||||| |||||||    
T  25298033 actttttcattatctcaattatacctttaaacaaatttttctataataaagatcgttgttggtgtcatt 25298101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 25822219 - 25822152
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||| ||||||||||||||  || ||||| |||||||| |||||||||||  |||| |||||||    
T  25822219 actttttcactatcccaattatacactt-aatcaatttttctataataaagattgtcgttggtgtcatt 25822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 31528615 - 31528683
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||  || ||  | |||||||| ||||||||||| ||||| |||||||    
T  31528615 actttttcattatctcaattatacatttaaacaactttttctataataaagattgttgttggtgtcatt 31528683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 43575735 - 43575683
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||||||||||||| || ||  | |||||||| |||||||||    
T  43575735 actttttcattatcccaattatacccttaaacaaatttttctataataaagat 43575683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 46880041 - 46880109
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||  |||||||||| || ||  |||||||||  ||||||||||| ||||| |||||||    
T  46880041 actttttcattatgtcaattatacccttaaacaattttttctgtaataaagattgttgttggtgtcatt 46880109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 52043358 - 52043426
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||  ||||| |||||||    
T  52043358 actttttcattatctcaattatacctttaaacaactttttctataataaagatttttgttggtgtcatt 52043426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 14730 - 14798
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||| ||||| |||||| || ||  |||||||||| ||||||||||| |||||||||||||    
T  14730 actttttcattaacccaaatatacccttaaacgattttttctataataaagattgttgttgatgtcatt 14798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 17210547 - 17210615
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  |||||||||| ||||||||||| ||||| |||||||    
T  17210547 actttttcattatctcaattatacccttaaacaattttttctataataaagattgttgttggtgtcatt 17210615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 5776604 - 5776547
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||||||||||||||| ||| | |||||||| ||||||||||| |||||    
T  5776604 tttttcattatcccaattataccattaaat-aatttttctataataaagattgttgttg 5776547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1612075 - 1612007
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  ||||||||||  |||||||||| || || |||||||    
T  1612075 actttttcattatcccaattatacccttaaacaattttttctattataaagattgttgctggtgtcatt 1612007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 19650691 - 19650751
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||||||||||||||| || ||  | |||||||| ||||||||||| |||||    
T  19650691 actttttcattatcccaattatacctttaaacaactttttctataataaagattgttgttg 19650751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 36226448 - 36226516
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  36226448 actttttcattatctcaattatacccttaaacaactttttctataataaagattgttgttggtgtcatt 36226516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 38697089 - 38697021
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||| |||||||||||||||| | || ||  |||||||||| ||||||||||| ||||| |||||||    
T  38697089 acttttccattatcccaattatatccttaaacaattttttctataataaagattgttgttggtgtcatt 38697021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 832163 - 832230
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcat 250  Q
    ||||||| ||||||||||||||||| || ||  | |||||||| ||||||||||| ||||| ||||||    
T  832163 acttttttattatcccaattatacctttaaacaactttttctataataaagattgttgttggtgtcat 832230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 36267099 - 36267166
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcat 250  Q
    ||||||| ||||| ||||||||||  || ||| |||||||||| ||||||||||| ||||| ||||||    
T  36267099 acttttttattattccaattatacatttgaataattttttctacaataaagattgttgttggtgtcat 36267166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 12082987 - 12083037
Alignment:
Q  186 ttttcattatcccaattataccattcaatcattttttctagaataaagatt 236  Q
    |||||||||||||||| ||||| || ||| |||||||||| ||||||||||    
T  12082987 ttttcattatcccaataatacccttaaataattttttctataataaagatt 12083037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 24836748 - 24836814
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||  || ||  |||||||||| |||||| |||| ||||| |||||||    
T  24836748 tttttcattatcccaattatactcttaaacaattttttctataataaatattgttgttggtgtcatt 24836814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 40716211 - 40716269
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||||||||||||| || ||  |||||||| | ||||||||||| |||||    
T  40716211 tttttcattatcccaattatacccttaaacaattttttcaataataaagattgttgttg 40716269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 8786797 - 8786729
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||| ||||||| |||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  8786797 acttttccattatctcaattatacctttaaacaactttttctataataaagattgttgttggtgtcatt 8786729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 19128688 - 19128620
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||| ||||||||||| || ||  | |||||||| ||||||||| | ||||| |||||||    
T  19128688 actttttcattattccaattatacccttaaacaactttttctataataaagatcgttgttggtgtcatt 19128620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 28766280 - 28766340
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||||||||||| ||||||  || ||  |||||||||| ||||||||||| |||||    
T  28766280 actttttcattatcccagttatactcttaaacaattttttctataataaagattgttgttg 28766340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 42027737 - 42027669
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||  || ||  |||||||||| ||||||||  | |||||||||||||    
T  42027737 actttttcattatctcaattatactcttaaacaattttttctataataaagaccgttgttgatgtcatt 42027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 4811 - 4877
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtca 249  Q
    ||||||||||||||||||||||||  || ||  |||||||||| ||||||||||| ||||| |||||    
T  4811 actttttcattatcccaattatacatttaaacaattttttctataataaagattgttgttggtgtca 4877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 1554755 - 1554821
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||| ||||||||||||||||| || ||| | |||||||| ||||||||||| ||||| |||||||    
T  1554755 ttttttattatcccaattatacccttaaataactttttctataataaagattgttgttggtgtcatt 1554821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 1170488 - 1170553
Alignment:
Q  186 ttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||||||||||| || |||   |||||||| ||||||||||| ||||| |||||||    
T  1170488 ttttcattatcccaattatacccttaaatagctttttctacaataaagattgttgttggtgtcatt 1170553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 4418384 - 4418449
Alignment:
Q  186 ttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||| ||||| |||||| || ||  |||||||||| ||||||||||| |||||||||||||    
T  4418384 ttttcattaacccaaatatacccttaaacgattttttctataataaagattgttgttgatgtcatt 4418449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 3739559 - 3739627
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | |||||||| ||||||| ||| ||||| |||||||    
T  3739559 actttttcattatcccaattatacctttaaacaactttttctataataaaggttgttgttggtgtcatt 3739627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 4437926 - 4437874
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||||||||||| |||| ||  |||||||||| |||||||||    
T  4437926 actttttcattatcccaattatatcattaaacaattttttctataataaagat 4437874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 33192613 - 33192561
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||||||||||||  || ||| |||||||||| |||||||||    
T  33192613 actttttcattatcccaattatactcttaaataattttttctataataaagat 33192561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 18918411 - 18918341
Alignment:
Q  183 actttttcattatcccaattatac--cattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||  | || ||  |||||||||| ||||||||| | |||||||||||||    
T  18918411 actttttcattatcccaattatacacctttaaacaattttttctataataaagatcgttgttgatgtcatt 18918341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 30800684 - 30800645
Alignment:
Q  183 actttttcattatcccaattataccattcaatcatttttt 222  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  30800684 actttttcattatcccaattatacccttaaatcatttttt 30800645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 38283643 - 38283697
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattg 237  Q
    |||||||||||||||||||||||   || ||| |||||||||| |||||||||||    
T  38283643 actttttcattatcccaattatattgttaaataattttttctataataaagattg 38283697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 38498482 - 38498548
Alignment:
Q  185 tttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||| ||||||||||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  38498482 ttttttattatcccaattatacccttaaacaactttttctacaataaagattgttgttggtgtcatt 38498548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 5049702 - 5049734
Alignment:
Q  219 ttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| |||||||||||||||||||||||||    
T  5049702 ttttctataataaagattggtgttgatgtcatt 5049734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 11929717 - 11929657
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    |||||||||||||| |||||||||| || ||  ||||||||||  |||||||||| |||||    
T  11929717 actttttcattatcacaattatacccttaaacaattttttctatgataaagattgttgttg 11929657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 15872155 - 15872095
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttg 243  Q
    ||||||||| ||||||||||||||| || ||  | |||||||| ||||||||||| |||||    
T  15872155 actttttcactatcccaattatacctttaaacaactttttctataataaagattgttgttg 15872095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 15919639 - 15919571
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | ||| |||| |||||||| || ||||| |||||||    
T  15919639 actttttcattatcccaattatacccttaaacaactttctctataataaagaatgttgttggtgtcatt 15919571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 24024036 - 24023984
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    ||||||||||||||| ||||||||| || ||  |||||||||| |||||||||    
T  24024036 actttttcattatccaaattatacccttaaacaattttttctataataaagat 24023984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 24688608 - 24688660
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    |||||||||||||| |||||||||| || ||  |||||||||| |||||||||    
T  24688608 actttttcattatctcaattatacctttaaacaattttttctataataaagat 24688660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 25722779 - 25722847
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| ||||||| ||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  25722779 actttttgattatcctaattatacctttaaacaactttttctataataaagattgttgttggtgtcatt 25722847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 27020585 - 27020517
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||| | ||||| |||||||    
T  27020585 actttttcattatctcaattatacccttaaacaactttttctacaataaagatcgttgttggtgtcatt 27020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 29684215 - 29684283
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||  || ||  | |||||||| ||||||||| | ||||| |||||||    
T  29684215 actttttcattatcccaattatacttttaaacaactttttctataataaagatcgttgttggtgtcatt 29684283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 32172985 - 32173037
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagat 235  Q
    |||||||||||||| |||||||||||||  |  |||||||||| |||||||||    
T  32172985 actttttcattatctcaattataccattttacaattttttctataataaagat 32173037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 34966680 - 34966748
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||  ||||| |||||||    
T  34966680 actttttcattatctcaattatacccttaaacaactttttctataataaagatttttgttggtgtcatt 34966748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 41942573 - 41942505
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||| ||| | |||||||    
T  41942573 actttttcattatctcaattatacccttaaacaactttttctataataaagattgttgtgggtgtcatt 41942505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 21104539 - 21104592
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattg 237  Q
    |||||||||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  21104539 actttttcattatcccaattataccattaaat-aatttttctataataaagattg 21104592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 28712076 - 28712008
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| |||||||||| || ||  | |||||||| ||||||||||| ||||| |||||||    
T  28712076 actttttcattatctcaattatacccttaaacaactttttctataataaagattgttgttggtgtcatt 28712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 31204155 - 31204087
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    |||||||||||||| || |||||||||| ||  |||||||||  ||||||||||| ||| |||||||||    
T  31204155 actttttcattatctcatttataccattaaacaattttttctcaaataaagattgttgtcgatgtcatt 31204087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 8771805 - 8771737
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| ||||| ||||||||||| || ||  |||||||||| ||||||||||  ||||| |||||||    
T  8771805 acttttttattattccaattatacccttgaacaattttttctataataaagattattgttggtgtcatt 8771737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 17353087 - 17353154
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| |||||||||||||||| ||| ||  | |||||||| ||||||||||| ||||| |||||||    
T  17353087 acttttttattatcccaattatac-atttaacaactttttctataataaagattgttgttggtgtcatt 17353154  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 20715814 - 20715882
Alignment:
Q  184 ctttttcattatcccaattataccattcaatcatttttt-ctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||| |||||||||| || ||  ||||||| ||| ||||||||||| ||||| |||||||    
T  20715814 ctttttcattatctcaattatacccttaaacaatttttttctataataaagattgttgttggtgtcatt 20715882  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 22535554 - 22535486
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||| | || ||  |||| ||||| ||||||||||| | ||| |||||||    
T  22535554 actttttcattatcccaattatatccttaaacaatttattctataataaagattgtttttggtgtcatt 22535486  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 41638 - 41569
Alignment:
Q  183 actttttcattatcccaattataccattcaatca-ttttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| || ||  | ||||||||| ||||||||||| ||||| |||||||    
T  41638 actttttcattatcccaattatacccttaaacaacttttttctataataaagattgttgttgttgtcatt 41569  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 8793 - 8725
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||| || |||||||||||||| || ||  |||||||||| ||||||||||| ||||||| |||||    
T  8793 acttttttatgatcccaattatacctttaaacaattttttctataataaagattgttgttgatttcatt 8725  T

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Target: scaffold0196; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 8285 - 8217
Alignment:
Q  183 actttttcattatcccaattataccattcaatcattttttctagaataaagattggtgttgatgtcatt 251  Q
    ||||||||||||||||||||||||| |  ||  ||||||||||  | |||||||| ||||| |||||||    
T  8285 actttttcattatcccaattataccttaaaacaattttttctaataaaaagattgttgttggtgtcatt 8217  T

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