View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_high_9 (Length: 297)
Name: NF14308_high_9
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 39838764 - 39838498
Alignment:
| Q |
17 |
agaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtgatagggtgcgggagttattgc |
116 |
Q |
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| T |
39838764 |
agaattgataatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtgatagggtgcgggagttattgc |
39838665 |
T |
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| Q |
117 |
tctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataaacttcttatcatctttgannnnnnnngtttggatcaaatg |
216 |
Q |
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| T |
39838664 |
tctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataaacttcttatcatctttgattttttttgtttggatcaaatg |
39838565 |
T |
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| Q |
217 |
agttaagtgtcaattgacattgaagtttgatgtctacactgtcaaatcatagtcctgaatgttatat |
283 |
Q |
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| T |
39838564 |
agttaagtgtcaattgacattgaagtttgatgtgtacactgtcaaatcatagtcctgaatgttatat |
39838498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 31289742 - 31289626
Alignment:
| Q |
19 |
aattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtgatagggtgcgggagttattgctc |
118 |
Q |
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| T |
31289742 |
aattgagaatgtgagtgttggattcaatgaataagaagaaggagttgaagggtttaaataaaggagaattgcaagtgatggggtgggggagttattgctt |
31289643 |
T |
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| Q |
119 |
tttcaataattatttaa |
135 |
Q |
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| T |
31289642 |
tttcattaattatttaa |
31289626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 31291038 - 31291112
Alignment:
| Q |
19 |
aattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtga |
96 |
Q |
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| T |
31291038 |
aattgagaatatgagtgttggattgaatgaataa---ggaggagtcgataggcttaaatagaggagaattgcatgtga |
31291112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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