View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14308_low_1 (Length: 872)

Name: NF14308_low_1
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14308_low_1
NF14308_low_1
[»] chr5 (9 HSPs)
chr5 (49-856)||(39732007-39732809)
chr5 (93-284)||(37476844-37477029)
chr5 (1-53)||(39732840-39732892)
chr5 (537-591)||(32676875-32676929)
chr5 (93-180)||(39868226-39868313)
chr5 (93-180)||(39901700-39901787)
chr5 (1-38)||(39901581-39901618)
chr5 (535-574)||(40837665-40837704)
chr5 (93-134)||(39913661-39913702)
[»] chr2 (3 HSPs)
chr2 (537-582)||(32201079-32201124)
chr2 (537-582)||(9929492-9929537)
chr2 (537-578)||(26575930-26575971)
[»] chr7 (5 HSPs)
chr7 (536-582)||(44572669-44572715)
chr7 (537-582)||(27616186-27616231)
chr7 (537-578)||(8799619-8799660)
chr7 (535-582)||(45216171-45216216)
chr7 (537-574)||(10678212-10678249)
[»] chr8 (2 HSPs)
chr8 (536-580)||(15850714-15850758)
chr8 (609-648)||(4770479-4770518)
[»] chr3 (1 HSPs)
chr3 (534-582)||(43922199-43922247)
[»] chr1 (3 HSPs)
chr1 (538-582)||(23431728-23431772)
chr1 (537-580)||(10171701-10171744)
chr1 (537-582)||(32740711-32740756)
[»] chr6 (1 HSPs)
chr6 (539-582)||(12843766-12843809)
[»] chr4 (2 HSPs)
chr4 (537-582)||(54305517-54305562)
chr4 (537-582)||(658677-658722)


Alignment Details
Target: chr5 (Bit Score: 711; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 49 - 856
Target Start/End: Complemental strand, 39732809 - 39732007
Alignment:
Q  49 gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  39732809 gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc 39732710  T
Q  149 tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732709 tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac 39732610  T
Q  249 taatgttgataaaaataaaagaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca 348  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732609 taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca 39732510  T
Q  349 gatgcttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcttgagtttgtgaatatgattttgaagttcatgaacca 448  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39732509 gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcatgagtttgtgaatatgattttgaagttcatgaacca 39732410  T
Q  449 tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732409 tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg 39732310  T
Q  549 gactccgacacgaacacctgacacgacactgacatgttgacactactaaataaatgcaaaaaacattggacaccgacaccgctacaaatttatttattta 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39732309 gactccgacacgaacacctgacacgacactgacatgttgacactactaaataaatgcaaaaaacattggacaccgacaccgctacaaatatatttattta 39732210  T
Q  649 taaatatatnnnnnnnnnnnnnnngacattactagctagtttcatagcatgtcatgttacatagcaaagaagacattactactatttatttatataaata 748  Q
    |||||| |                |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  39732209 taaataaa-----ataaaataaaagacattactagctagtttcatagcatatcatgttacatagcaaagaagacattactgctatttatttataaaaata 39732115  T
Q  749 aaaaagacattactagtaatcaaatcggtaaaagatgatgatgacattgaatacctgaatctgttgtctttcttctcttatgagctgcaaaagaggtact 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732114 aaaaagacattactagtaatcaaatcggtaaaagatgatgatgacattgaatacctgaatctgttgtctttcttctcttatgagctgcaaaagaggtact 39732015  T
Q  849 tctttcat 856  Q
    ||||||||    
T  39732014 tctttcat 39732007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 284
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
Q  93 ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa 192  Q
    ||||||||| || | ||||||| |||||||||||||| |||||||| ||  |||   || ||||||  | |||||||||||||||||| |  |||| |||    
T  37476844 ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa 37476943  T
Q  193 ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaaaataaaagaaaagagcaattaag 284  Q
    ||||||| | ||||||      ||||| || ||||| |||||||||||| | | ||||||||| || || ||||| ||||||||||||||||    
T  37476944 ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag 37477029  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39732892 - 39732840
Alignment:
Q  1 taacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa 53  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  39732892 taacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa 39732840  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 32676929 - 32676875
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgacatgttgacac 591  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  32676929 ctatgaagcatggactccgacacggacacctgacacgacactgacacgtcgacac 32676875  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
Q  93 ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat 180  Q
    ||||||||| || |||||||| ||||||||||||||| ||||||||||   |||| || |||||||||   |||||||||||||||||    
T  39868226 ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat 39868313  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
Q  93 ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat 180  Q
    ||||||||||||||| ||||| ||||||||||||||| ||| || | || ||||| ||  ||||||||| |||||| ||||| |||||    
T  39901700 ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat 39901787  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39901581 - 39901618
Alignment:
Q  1 taacaactacaacaaaatcacttcctccaatagataga 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  39901581 taacaactacaacaaaatcacttcctacaatagataga 39901618  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 574
Target Start/End: Original strand, 40837665 - 40837704
Alignment:
Q  535 acctatgaagcatggactccgacacgaacacctgacacga 574  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  40837665 acctatgaagtatggactccgacacggacacctgacacga 40837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
Q  93 ataccatttatagcccccaacatcaaatacatctgaacagag 134  Q
    ||||||||||||||||||| | ||||||||||||||| ||||    
T  39913661 ataccatttatagcccccagcttcaaatacatctgaatagag 39913702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 32201124 - 32201079
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  32201124 ctatgaagcatggactccaacacgaacacctgacacgacactgaca 32201079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 9929492 - 9929537
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  9929492 ctatgaagcatggactacgacacaaacacttgacacgacactgaca 9929537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 26575930 - 26575971
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacact 578  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  26575930 ctatgaagcatggactccgacacggacacctgacacaacact 26575971  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 582
Target Start/End: Complemental strand, 44572715 - 44572669
Alignment:
Q  536 cctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||    
T  44572715 cctatgaagcatggactccgacacggactcctgacacgacactgaca 44572669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 27616186 - 27616231
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  27616186 ctatgaagcatggactccgacacgtacacctgacacgatactgaca 27616231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 8799619 - 8799660
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacact 578  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  8799619 ctatgacgcatggactccgacacggacacctgacacgacact 8799660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 45216216 - 45216171
Alignment:
Q  535 acctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||    
T  45216216 acctatgaagcatggactc--acacggacacctgacacgacactgaca 45216171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 10678212 - 10678249
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacga 574  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  10678212 ctatgaagcatggactccgacacggacacctgatacga 10678249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 15850758 - 15850714
Alignment:
Q  536 cctatgaagcatggactccgacacgaacacctgacacgacactga 580  Q
    |||||||| |||||||||||||||| |||||||||||||||||||    
T  15850758 cctatgaaacatggactccgacacggacacctgacacgacactga 15850714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 648
Target Start/End: Complemental strand, 4770518 - 4770479
Alignment:
Q  609 aaacattggacaccgacaccgctacaaatttatttattta 648  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  4770518 aaacattggacaccgacaccgttacaaatttattaattta 4770479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 582
Target Start/End: Complemental strand, 43922247 - 43922199
Alignment:
Q  534 tacctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  43922247 tacctatgaagcatggactccgacacagatacctgacacgacactgaca 43922199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 582
Target Start/End: Original strand, 23431728 - 23431772
Alignment:
Q  538 tatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  23431728 tatgaagcatggactccgacacggacacctgatacgacactgaca 23431772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 580
Target Start/End: Complemental strand, 10171744 - 10171701
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactga 580  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  10171744 ctatgaagcatggactccaacacggacaccggacacgacactga 10171701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 32740711 - 32740756
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||    
T  32740711 ctatgaagcacagacttcgacacgaacatctgacacgacactgaca 32740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 539 - 582
Target Start/End: Original strand, 12843766 - 12843809
Alignment:
Q  539 atgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  12843766 atgaagcatggactccgacacggacacttgacacgacactgaca 12843809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 54305517 - 54305562
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||    
T  54305517 ctatgaagcatggactccaacacggacacctgacacaacactgaca 54305562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 658722 - 658677
Alignment:
Q  537 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 582  Q
    |||||||||| ||||||||||| | ||||| |||||||||||||||    
T  658722 ctatgaagcacggactccgacatggacacccgacacgacactgaca 658677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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