View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_low_15 (Length: 217)
Name: NF14308_low_15
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 34554349 - 34554530
Alignment:
| Q |
17 |
aatatcatgtatcttcacacaccctgggacattgctatccaacaacaagaagcatctctttagatcgtccacgaaactattcactcgatttcttgctttc |
116 |
Q |
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| T |
34554349 |
aatatcatgtatcttcacacaccctgggacattgctatccaacaacaagaagcatctctttagatcgtccacaaaactattcactcggtttcttgctttc |
34554448 |
T |
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| Q |
117 |
catggctcaccgatagctttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccg |
198 |
Q |
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| T |
34554449 |
catggctcaccgatagctttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccg |
34554530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 34566023 - 34566202
Alignment:
| Q |
17 |
aatatcatgtatcttcacacaccctgggacattgctatccaacaacaagaagcatctctttagatcgtccacgaaactattcactcgatttcttgctttc |
116 |
Q |
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| T |
34566023 |
aatatcatgcatcttcacacaccctggcacactgctatccaacaataaaaactttctccttagatcttccaccaatgtatgcactcgatttcttgcttcc |
34566122 |
T |
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| Q |
117 |
catggctcaccgatagctttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttc |
196 |
Q |
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| T |
34566123 |
catgatgcactgatgtctttgaacggacccaagccaaaaccatgacacaataaactttcaatgggaatgtcaaagtcttc |
34566202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 34291645 - 34291707
Alignment:
| Q |
134 |
tttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttc |
196 |
Q |
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| T |
34291645 |
tttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttc |
34291707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 130437 - 130268
Alignment:
| Q |
27 |
atcttcacacaccctgggacattgctatccaacaacaagaagcatctctttagatcgtccacgaaactattcactcgatttcttgctttccatggctcac |
126 |
Q |
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| T |
130437 |
atcttcacacaccctggaacattgctgtccaacaacaagaaacatctctttagatcgcccaccaaactacgcactcgatttcttgctttcaatggctcac |
130338 |
T |
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| Q |
127 |
cgatagctttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttc |
196 |
Q |
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| T |
130337 |
caacggctttgaacaatcccaagcctattgcatgacgcaataaaatttcaataggaatatcaaagtcttc |
130268 |
T |
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