View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_low_3 (Length: 618)
Name: NF14308_low_3
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 581
Target Start/End: Original strand, 30506440 - 30507014
Alignment:
| Q |
16 |
atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagaattgacaatcattttactcctccattaattaa-gaaaaatgata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
30506440 |
atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagagttgacgatcatttcactcctccattaattaaagaaaaatgata |
30506539 |
T |
|
| Q |
115 |
tttaaacaattannnnnnnacaacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttggtcattatattgttaataa |
214 |
Q |
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|||||| || || ||||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| | || ||||| |
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| T |
30506540 |
tttaaataactatttttttacaacttg----acaattttctcttttatacttatattttgtattcactctctattgttttggccattatgtcgtcaataa |
30506635 |
T |
|
| Q |
215 |
ccaaatttctttatgtattttatttctctaagaggtattcccaacaaataattgttaaaataacattcctcttaattaaagttgtacaaagtgagaccta |
314 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506636 |
ccaaatttctttatgtattttagttctctaagaggtattcccaacaaataattgttaaaataacattcctcttaattaaagttgtacaaagtgagaccta |
30506735 |
T |
|
| Q |
315 |
atcgttcttatggcgtttattatataagaataatgcactatggttagaatcgaatgcactaaataaaacaggatcgtgtgaaagctagaactagtattta |
414 |
Q |
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| T |
30506736 |
gtcggccgtatggcgtttattatataagaataatgcactatggttagaatcgaatgcactaaataaaacaggatcgtgtgaaagctagaactagtattta |
30506835 |
T |
|
| Q |
415 |
acaccacatgccatttaaagctttaaa--gtatttaacacacnnnnnnnnnnnntaagtgttttttagcc----------aaaattggtccgttgcactt |
502 |
Q |
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| T |
30506836 |
acaccacatgccatttaaagctttaaaatgtatttaacacacgaaaaacaaaaataagtgttttttagccaaaattgggtaaaattggtccgttgcactt |
30506935 |
T |
|
| Q |
503 |
tttattaaactcgaattacgataaaacattaaaatggggcagcaagcccgtgcgtcacgccttggtcatgtacttgcat |
581 |
Q |
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| T |
30506936 |
tttattaaacttgaattacgataaaacattaaaacggggcagcaagcccgtgtgtcacgccttggtcatgtacttgcat |
30507014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 10731575 - 10731612
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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| T |
10731575 |
acaacttttgtaacaactttctcttttatactcatatt |
10731612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 48062086 - 48062123
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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|||||||||||||||| ||||||| ||||||||||||| |
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| T |
48062086 |
acaacttttgtaacaactttctctcttatactcatatt |
48062123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 42853606 - 42853643
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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|||||||||||||||||||| ||| ||||||||||||| |
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| T |
42853606 |
acaacttttgtaacaattttatctcttatactcatatt |
42853643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 26501521 - 26501484
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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||||||||||| |||||||||||||| ||||||||||| |
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| T |
26501521 |
acaacttttgtgacaattttctctttcatactcatatt |
26501484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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