View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_low_4 (Length: 474)
Name: NF14308_low_4
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 372 - 471
Target Start/End: Original strand, 10020308 - 10020407
Alignment:
| Q |
372 |
ctttggtcaaaagcacatgcaaggttaaacaccacatcttaattcaaaatattaagacattaagtttataggtcatctctcatctaatattcttcgacat |
471 |
Q |
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| T |
10020308 |
ctttggtcaaaagcacatgcgaggttaaacaccacatcgtaattcaaaatattaagacattgagtttataagtcatctctcatctaatattattcaacat |
10020407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 10020261 - 10020311
Alignment:
| Q |
18 |
ctaataacaaatatggtcaaataaagggagcaagttaaacttgctcgcttt |
68 |
Q |
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| T |
10020261 |
ctaataacaaatatggtcaaataaagggagcaagttaaacctgctcgcttt |
10020311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 10019588 - 10019553
Alignment:
| Q |
18 |
ctaataacaaatatggtcaaataaagggagcaagtt |
53 |
Q |
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| T |
10019588 |
ctaatgacaaatatggtcaaataaagggagcaagtt |
10019553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 36069113 - 36069073
Alignment:
| Q |
400 |
acaccacatcttaattcaaaatattaagacattaagtttat |
440 |
Q |
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| T |
36069113 |
acaccacatcttaagtcaaaatattaagaaattaggtttat |
36069073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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