View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14308_low_6 (Length: 323)
Name: NF14308_low_6
Description: NF14308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14308_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 45036382 - 45036684
Alignment:
| Q |
1 |
aatatcaagtagttgttagaacagaacacttactttccttctaactctaaaactaagattaccaaagaactagttgaaaattcaccaatcatactttagc |
100 |
Q |
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| T |
45036382 |
aatatcaagtagttgttagaacagaacacttactttccttctaactctaaaactaagattaccaaagaactagttgaaaattcaccaatcatactttagc |
45036481 |
T |
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| Q |
101 |
tatgatgaaggagataaaaagtggttgagattaatcaaggtaaagtattaactaaccttcatattgttatggaagctactgagctgaggtagaagaactc |
200 |
Q |
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| T |
45036482 |
tatgatgaaggagataaaaagtggtt----ttaatgaaggtaaagtattaactaaccttcatattgttatggaagctactgagctgaggtagaagaactc |
45036577 |
T |
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| Q |
201 |
ttgatgcaaattgtaatagaagggaaagaaaagttaaggagataatatttgaatttgaaattaagttatgaaatgaagatgatagtttgatgattattta |
300 |
Q |
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| T |
45036578 |
ttgatgcaaattgtaatagaagggaaagaaaagttaaggagataatttttgaatttgaaattaagttatgaaatgaagatgataatttgatgattattta |
45036677 |
T |
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| Q |
301 |
tagtata |
307 |
Q |
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| T |
45036678 |
tagtata |
45036684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 46175992 - 46176084
Alignment:
| Q |
139 |
ggtaaagtattaactaaccttcatattgttatggaagctactgagctgaggtagaag-aactcttgatgcaaattgtaatagaagggaaagaa |
230 |
Q |
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| T |
46175992 |
ggtaaagtattaactaaccttcatattgttatggaagcttatgagctaaggtagaagaaactcttgatgcaaattgtaatagaagggaaagaa |
46176084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 45043855 - 45044007
Alignment:
| Q |
76 |
gaaaattcaccaatcatactttagctatgatgaaggagataaaa-agtggttgagattaatcaaggtaaagtattaactaaccttcatattgttatggaa |
174 |
Q |
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| T |
45043855 |
gaaaatttaccaatcgtgcattagatatgatcaagaagataaaagagtggtt----ttaatcagggtaaagtattaactaaccttcatattgatatggaa |
45043950 |
T |
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| Q |
175 |
gctactgagctgaggtagaag-aactcttgatgcaaattgtaatagaagggaaagaa |
230 |
Q |
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| T |
45043951 |
gcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaa |
45044007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 45041967 - 45042014
Alignment:
| Q |
163 |
attgttatggaagctactgagctgaggtagaagaactcttgatgcaaa |
210 |
Q |
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| T |
45041967 |
attgttatggaagctttagagctaaggtagaagaactcttgatgcaaa |
45042014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 45044042 - 45044107
Alignment:
| Q |
239 |
gagataatatttgaatttgaaattaagttatgaaatgaagatgatagtttgatgattatttatagta |
305 |
Q |
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| T |
45044042 |
gagataat-tttcaatttgaagttaagttatgaagtgaagatgataatttgagacttatttatagta |
45044107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 46176119 - 46176184
Alignment:
| Q |
239 |
gagataatatttgaatttgaaattaagttatgaaatgaagatgatagtttgatgattatttatagta |
305 |
Q |
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| T |
46176119 |
gagataat-tttcaatttgaagttaagttatgaagtgaagatgataatttgtggcttatttatagta |
46176184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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