View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_high_11 (Length: 372)
Name: NF14309_high_11
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 14535700 - 14535918
Alignment:
| Q |
140 |
ctcaccttttccattctttcgaaaaatcc-attttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattc |
238 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14535700 |
ctcaccttttccattctttcaaaaaatcccattttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattc |
14535799 |
T |
|
| Q |
239 |
tcctccttgtaatctccaagaacgaagccacagctggaacgggctctcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttccc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14535800 |
tcctccttgtaatctccaagaacgaagccacagctggaacgggctcgcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaacttccc |
14535899 |
T |
|
| Q |
339 |
ctcatttggcccttgtaac |
357 |
Q |
| |
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||||||||||||||||||| |
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| T |
14535900 |
ctcatttggcccttgtaac |
14535918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 14518062 - 14518411
Alignment:
| Q |
1 |
gcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatacaaatttctcaccnnnnnnnct |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | || |
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| T |
14518062 |
gcgcgttgttttccctggagaggaatgtatgatgtcaaacaca---aaaagacatccaaaaatcttatactattaatacaaatttctcaacaaaaaaact |
14518158 |
T |
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| Q |
101 |
aattgaatgtactttgcgaatataaagatgcatacactactcaccttttccattctttcgaaaaatcc-attttggtcttagtttttgttcctgtgtggc |
199 |
Q |
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|| ||| |||||||||||||||||||| |||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||| ||| || |
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| T |
14518159 |
aaaggaaactactttgcgaatataaagatacatacact---catcttttccattctttcgaagaatcccattttggtcttagtttttgttcctttgttgc |
14518255 |
T |
|
| Q |
200 |
agtctgccaccaattcttgtccagatttcgattctattctcctccttgtaatctccaagaacgaagccacagctggaacgggctctcttatcggctgcac |
299 |
Q |
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||| |||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||||| |||||||| |
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| T |
14518256 |
agtgcgccaccaactcttgtctagagttcgattctattctcctccttgaaatctgcaagaacgaagccaaagctgcaacgtgctctcttattggctgcac |
14518355 |
T |
|
| Q |
300 |
aatgcaaatgtcaccaattcctgctgcagacaacttcccctcatttggcccttgta |
355 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14518356 |
aatgcaaatgtcaccaattcttgctgcagacaacttcccctcatttggcccttgta |
14518411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 14531114 - 14531272
Alignment:
| Q |
1 |
gcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatacaaatttctcaccnnnnnnnct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
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| T |
14531114 |
gcgcgttgttttccctggagaggaatatatgatgtcaaacacacaaaaaaaacatccaaaaattttatactattaatacaaatttctcaacaaaaaaact |
14531213 |
T |
|
| Q |
101 |
aattgaatgtactttgcgaatataaagatgcatacactactcaccttttccattctttc |
159 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14531214 |
aattgaatgtactttgcgaatctaaagatgcatacactactcaccttttccattctttc |
14531272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14535621 - 14535697
Alignment:
| Q |
1 |
gcgcgttgttttccctggagaggaatatatgatgtcaaacacacnnnnnnnncatccaaaaattttatactattaatac |
79 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
14535621 |
gcgcgttgttttccctgaagaggaatatatgatgtcaaacacac--aaaaaacatccaaaaatcttatactattaatac |
14535697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 134 - 357
Target Start/End: Complemental strand, 37338233 - 37338009
Alignment:
| Q |
134 |
acactactcaccttttccattctttcgaaaaatcc-attttggtcttagtttttgttcctgtgtggcagtctgccaccaattcttgtccagatttcgatt |
232 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||| | ||||||| |||||||||| |||||||||| |||| |
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| T |
37338233 |
acactactcaccttttgcattctttcgaagaatcccattttggttttagtttttgttcctttatggcagttcaccaccaattcctgtccagattgtgatt |
37338134 |
T |
|
| Q |
233 |
ctattctcctccttgtaatctccaagaacgaagccacagctggaacgggctctcttatcggctgcacaatgcaaatgtcaccaattcctgctgcagacaa |
332 |
Q |
| |
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||| |||||||||||||||||||||||| |||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| | || |||| ||| |
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| T |
37338133 |
ctagtctcctccttgtaatctccaagaaaaaagccacagctggatcatgctcttttataggctgcacaatgcaaatgtcaccaatttcggcagcagtcaa |
37338034 |
T |
|
| Q |
333 |
cttcccctcatttggcccttgtaac |
357 |
Q |
| |
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||| || ||||||||||| |||||| |
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| T |
37338033 |
ctttccttcatttggcccatgtaac |
37338009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 37327529 - 37327441
Alignment:
| Q |
188 |
ttcctgtgtggcagtctgccaccaattcttgtccagatttcgattctattctcctccttgtaatctccaagaacgaagccacagctgga |
276 |
Q |
| |
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||||||||| ||||| |||||| ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
37327529 |
ttcctgtgttgcagtacaccaccatttcctgtccagattgtgattctattctcctccttgtaatctctaagaatgaagccacagctgga |
37327441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 37327620 - 37327556
Alignment:
| Q |
122 |
ataaagatgcatacactactcaccttttccattctttcgaaa-aatccattttggtcttagtttt |
185 |
Q |
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|||||||| || |||||||||||||||| ||||| ||| ||| || |||||||| |||||||||| |
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| T |
37327620 |
ataaagatacacacactactcaccttttgcattcgttcaaaataacccattttgctcttagtttt |
37327556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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