View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_high_12 (Length: 371)

Name: NF14309_high_12
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_high_12
NF14309_high_12
[»] chr4 (9 HSPs)
chr4 (35-357)||(9582728-9583050)
chr4 (35-357)||(9588423-9588745)
chr4 (93-357)||(9568251-9568518)
chr4 (18-357)||(9594524-9594860)
chr4 (73-264)||(9573376-9573569)
chr4 (48-245)||(9603439-9603636)
chr4 (11-66)||(9568194-9568249)
chr4 (141-234)||(54295949-54296042)
chr4 (147-227)||(37894937-37895017)
[»] chr6 (17 HSPs)
chr6 (141-319)||(34279321-34279499)
chr6 (141-265)||(29123221-29123345)
chr6 (128-264)||(32745720-32745856)
chr6 (143-294)||(29152911-29153062)
chr6 (124-321)||(32973437-32973634)
chr6 (149-265)||(29144369-29144485)
chr6 (144-264)||(29149729-29149849)
chr6 (164-264)||(23216833-23216933)
chr6 (124-227)||(34281023-34281126)
chr6 (144-234)||(29299147-29299237)
chr6 (141-321)||(25320109-25320289)
chr6 (141-321)||(26149802-26149982)
chr6 (148-262)||(21379306-21379420)
chr6 (141-234)||(29130394-29130487)
chr6 (141-235)||(34259146-34259240)
chr6 (179-265)||(29136409-29136495)
chr6 (141-262)||(13339137-13339258)
[»] chr7 (2 HSPs)
chr7 (161-265)||(42445421-42445525)
chr7 (201-265)||(7792973-7793037)
[»] scaffold0134 (1 HSPs)
scaffold0134 (142-235)||(17144-17237)
[»] chr5 (5 HSPs)
chr5 (149-227)||(31788623-31788701)
chr5 (149-232)||(42405814-42405897)
chr5 (148-262)||(27174334-27174448)
chr5 (149-263)||(40548366-40548480)
chr5 (149-265)||(37512003-37512119)
[»] scaffold0054 (1 HSPs)
scaffold0054 (141-262)||(34326-34447)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 9583050 - 9582728
Alignment:
Q  35 ttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagca 134  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9583050 ttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaaggtgagca 9582951  T
Q  135 ccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||||| |||||| ||||||    
T  9582950 ccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctctt 9582851  T
Q  235 acctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctctgctagtaaaggaa 334  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | |||||||||  ||| |||     
T  9582850 atctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggat 9582751  T
Q  335 ttagaacttggtaaagaagtttt 357  Q
    || |||||||||||||| |||||    
T  9582750 ttcgaacttggtaaagacgtttt 9582728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 9588745 - 9588423
Alignment:
Q  35 ttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagca 134  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9588745 ttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaaggtgagca 9588646  T
Q  135 ccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||||| |||||| ||||||    
T  9588645 ccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctctt 9588546  T
Q  235 acctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctctgctagtaaaggaa 334  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | |||||||||  ||| |||     
T  9588545 atctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggat 9588446  T
Q  335 ttagaacttggtaaagaagtttt 357  Q
    || |||||||||||||| |||||    
T  9588445 ttcgaacttggtaaagacgtttt 9588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 357
Target Start/End: Original strand, 9568251 - 9568518
Alignment:
Q  93 cgccgatggagtcagtcgctgctnnnnnnngaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatc 192  Q
    ||||||||||||||||||||||        ||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9568251 cgccgatggagtcagtcgctgcaaaaaaaagaaaggtgagcacaacctgtatatctgatgatattgccttctctattctatccaaattgccttttaaatc 9568350  T
Q  193 tattaagagatttgaatgcgttcgcaaatcatggtatct---cttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttct 289  Q
    ||||||| |||||||||||||||| |||||||||| |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9568351 tattaagcgatttgaatgcgttcgtaaatcatggtctctgatcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattct 9568450  T
Q  290 caccgatgctcgtattacgatggagcatctctgctagtaaaggaattagaacttggtaaagaagtttt 357  Q
    ||| |||   | |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  9568451 cacagatatccttattacgatggagcatctcttcttctaaaggatttagaacttggtaaagaagtttt 9568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 9594860 - 9594524
Alignment:
Q  18 ttagggtttctactttcttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnn 117  Q
    |||||||||||||||| |   ||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||||||||||| || ||       
T  9594860 ttagggtttctacttttt---actgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaa 9594764  T
Q  118 nnnnngaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgc 217  Q
         ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||| |||||||||| ||||||    
T  9594763 aaagagaaaggtgagcaccacctatatagctgatgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgc 9594664  T
Q  218 aaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcat 317  Q
    ||| |||||| |||||||  |||||||  |||||||||||||||||||  ||| ||||| ||||||| ||||||||||||  | |||||||| || | ||    
T  9594663 aaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacgggggat 9594564  T
Q  318 ctctgctagtaaaggaattagaacttggtaaagaagtttt 357  Q
    |||||||  ||||||| || |||||||||||||| |||||    
T  9594563 ctctgcttctaaaggatttcgaacttggtaaagacgtttt 9594524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 9573376 - 9573569
Alignment:
Q  73 attgcattccaatttgcaaccgccgatggagtcagtcgct-gctnnnnnnngaaaggtgagcaccaccgatatatctgatgatatt-gccttctccattc 170  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||        ||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  9573376 attgcattacaatttgcaaccgccaatggagtcagtggcttgcagaaaaaagaaaggtgagcaccacctatatacctgatgatatttgccttctccattc 9573475  T
Q  171 tatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgtt 264  Q
    |||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||| ||| |||  |||||||| |||||| | |||||||||    
T  9573476 tatccaaattgcctattaaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaattgaaaaccatcactttaagaacatgtt 9573569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 9603636 - 9603439
Alignment:
Q  48 aatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagcaccaccgatatatc 147  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  | |||||||| || ||||          |||||  ||||||||| ||||| |    
T  9603636 aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaaagggtagcaccacctatatacc 9603537  T
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaacc 245  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || | ||| |||||| ||||||| |||| ||||    
T  9603536 tgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctcttatctgagaacc 9603439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 9568194 - 9568249
Alignment:
Q  11 aaaaaggttagggtttctactttcttctactaatcccaatcactttgcgctttcaa 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9568194 aaaagggttagggtttctactttcttctactaatcccaatcactttgcgctttcaa 9568249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 54296042 - 54295949
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||||||||| ||||||||||| |||| ||| ||||| |||||||| ||||  |||||||||||||||| | |||||||| ||||||    
T  54296042 atatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt 54295949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 37894937 - 37895017
Alignment:
Q  147 ctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    |||| ||| ||||||||||||||||||||||| | ||| | |||||| | ||| |||||||||| |||| | |||||||||    
T  37894937 ctgaagatgttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaatgtgttcactaatcatggt 37895017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 34279499 - 34279321
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||||||||||||||||||||||||||| || ||||| ||| |||||||| | ||||| |||||||| ||| | |||||||||||||| ||| ||||    
T  34279499 atatatctgatgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaatcatggtatcttttatctga 34279400  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatct 319  Q
    ||| | ||||||||||||||||||| ||||| || |  |||||| |||||| || || || ||||| ||||||||||||    
T  34279399 aaatcatcacttcatgaacatgttccacaaggatttggtatctaattctcatcgttgttcttattatgatggagcatct 34279321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 29123221 - 29123345
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||  || |||||| ||||||||||||||||| ||||||  ||||    
T  29123221 atatatctgatgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgtctga 29123320  T
Q  241 aaaccctcacttcatgaacatgttc 265  Q
    | |  |||| |||||||||||||||    
T  29123321 agatactcatttcatgaacatgttc 29123345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 32745856 - 32745720
Alignment:
Q  128 gtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    ||||| |||| | ||||| |||||||||||||||||||||| ||||| ||| | ||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32745856 gtgagtaccaactatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggt 32745757  T
Q  228 atctcttacctgaaaaccctcacttcatgaacatgtt 264  Q
     ||||||| |||||||  |||| ||||||||||||||    
T  32745756 ctctcttatctgaaaatactcatttcatgaacatgtt 32745720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 294
Target Start/End: Complemental strand, 29153062 - 29152911
Alignment:
Q  143 atatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaa 242  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||| | |||   |||||||| ||||||||||||||||  ||| || ||||||    
T  29153062 atatctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatcatggtccctcctatctgaaa 29152963  T
Q  243 accctcacttcatgaacatgttctacaagaatcttttatctagttctcaccg 294  Q
    | | |||||||||||||||||||  ||| ||| | ||||| | |||||||||    
T  29152962 aacatcacttcatgaacatgttccgcaataatttcttatccaattctcaccg 29152911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 321
Target Start/End: Complemental strand, 32973634 - 32973437
Alignment:
Q  124 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 223  Q
    |||||||||||||||  |||| |||||||| ||| ||||||  |||||||| ||||||||| |||||||| | ||| | |||||||| ||| | ||||||    
T  32973634 aaaggtgagcaccacatatatttctgatgaaatttccttctatattctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatca 32973535  T
Q  224 tggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
    |||| ||||||| |||||||||  |||||| ||||  |||||| ||| ||| | ||||||| |||||  ||  | || |||||| |||||||||||||    
T  32973534 tggtctctcttatctgaaaaccaacacttcgtgaaagtgttctgcaacaatttattatctaattctcttcgtggttcttattacaatggagcatctct 32973437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 29144369 - 29144485
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||| | ||| |||||| ||||||||| ||||| ||||||||||||  |||| |  |||    
T  29144369 gatgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttatttgaagatactc 29144468  T
Q  249 acttcatgaacatgttc 265  Q
    | |||||||||||||||    
T  29144469 atttcatgaacatgttc 29144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 29149849 - 29149729
Alignment:
Q  144 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaa 243  Q
    |||| |||||||| |||||||||||||| || ||||||||| |||||||| ||||  ||||||||||||||||||||||||||| ||||||  |||| ||    
T  29149849 tatccgatgatatagccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctgagaa 29149750  T
Q  244 ccctcacttcatgaacatgtt 264  Q
       ||||||||||| ||||||    
T  29149749 taatcacttcatgagcatgtt 29149729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 23216933 - 23216833
Alignment:
Q  164 tccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgt 263  Q
    ||||||||||| || || ||| |||||||| | |||||||||||||| |||||||||||||||| |||||||  ||| ||  |||| |||||||||||||    
T  23216933 tccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgt 23216834  T
Q  264 t 264  Q
    |    
T  23216833 t 23216833  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 34281023 - 34281126
Alignment:
Q  124 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 223  Q
    ||||||||||||| |  | ||||||||||||||||||||||| ||||| || ||||||||| |||||||| | ||| | ||||| ||  |||||||||||    
T  34281023 aaaggtgagcaccgcatacatatctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttgagtgtcttcgcaaatca 34281122  T
Q  224 tggt 227  Q
    ||||    
T  34281123 tggt 34281126  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 29299147 - 29299237
Alignment:
Q  144 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||||||||||| || || |||||||| || || |||||| |||||||| ||||| | |||||||| |||||||||||||||| ||||||    
T  29299147 tatctgatgatatagctttttccattctctcaaagttgcctcttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctctt 29299237  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 25320289 - 25320109
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  25320289 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 25320190  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  25320189 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 25320109  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 26149982 - 26149802
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  26149982 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 26149883  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  26149882 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 26149802  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 21379420 - 21379306
Alignment:
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 247  Q
    ||||||||| | |||||| |||||||| || || ||| |||||||| | ||| |||||| |||||| || |||||||||| |||||||  ||||||| ||    
T  21379420 tgatgatatagtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacact 21379321  T
Q  248 cacttcatgaacatg 262  Q
     | ||||||||||||    
T  21379320 tatttcatgaacatg 21379306  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 29130394 - 29130487
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| || ||||||||  |||||||||||| || || |||||| |||||||| | ||| ||||||||| |||||| |||||||||| ||||||    
T  29130394 atatacctcatgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctctt 29130487  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 34259240 - 34259146
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 235  Q
    ||||| || |||||||||||||||| ||||||  |||| | ||| |||| ||| | ||| |||||| ||||||||| |||||||||| |||||||    
T  34259240 atatacctcatgatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctctta 34259146  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 29136409 - 29136495
Alignment:
Q  179 ttgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 265  Q
    |||||| |||||||| | ||| |  ||||||||||| |||||||||||| |||||||  ||||||  |||  |||||||||||||||    
T  29136409 ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttc 29136495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 13339137 - 13339258
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| ||||| ||| ||||| | |||||||||||| | ||| |||||||| |  |  |||||  ||||||||||||||||||||  ||||||  |||    
T  13339137 atatatcagatgacatttccttcacgattctatccaaacttcctcttaaatctttgtaccgatttcgatgcgttcgcaaatcatggtcactcttatttga 13339236  T
Q  241 aaaccctcacttcatgaacatg 262  Q
    |||||  ||  |||||||||||    
T  13339237 aaaccaacatctcatgaacatg 13339258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 42445421 - 42445525
Alignment:
Q  161 ttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaaca 260  Q
    ||||||||| |||| ||||| ||| |||||||| ||||| |||||||||| ||||| ||||  |||| ||||||| ||||||||| ||| ||||||||||    
T  42445421 ttctccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaaccatcatttcatgaaca 42445520  T
Q  261 tgttc 265  Q
    |||||    
T  42445521 tgttc 42445525  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 7792973 - 7793037
Alignment:
Q  201 gatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 265  Q
    ||||| |||| ||||||| ||||||||   |||||| |||||||| ||| |||||||||||||||    
T  7792973 gatttcaatgtgttcgcatatcatggtcagtcttacttgaaaaccatcatttcatgaacatgttc 7793037  T

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Target: scaffold0134 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 17237 - 17144
Alignment:
Q  142 tatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 235  Q
    |||| |||| ||||||  ||| ||||||||||| || |||||| |||||||| | |||||||||||||||||| |||||||||||| |||||||    
T  17237 tatacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctctta 17144  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31788623 - 31788701
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    ||||||||||||||||| |||||||| ||| | ||  |||||||| | ||  ||||||||||||| |||||||||||||    
T  31788623 gatgatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggt 31788701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 42405814 - 42405897
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctc 232  Q
    |||||||||||||| || ||| | || ||| ||||| |||||||| | ||| |||||||| |||| || |||||||||||||||    
T  42405814 gatgatattgccttatctattatgtcgaaactgcctgttaaatctttaaagcgatttgaaagcgtacgtaaatcatggtatctc 42405897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 27174448 - 27174334
Alignment:
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 247  Q
    |||||||||| ||||||| | |||||| ||||| ||| | |||||| | ||| |||||| |||||| ||||||||||| |  || |||  |||||| |||    
T  27174448 tgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatcct 27174349  T
Q  248 cacttcatgaacatg 262  Q
    |  ||||||||||||    
T  27174348 cttttcatgaacatg 27174334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 40548366 - 40548480
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    |||||||||||||| ||||||||||  ||| | ||| |||||||| | ||| ||||||||||| |  | |||||||||| || | || ||||| || |||    
T  40548366 gatgatattgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaatgcataagtaaatcatggtctcacctatctgaagactctc 40548465  T
Q  249 acttcatgaacatgt 263  Q
    | ||||||| |||||    
T  40548466 agttcatgaccatgt 40548480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 37512003 - 37512119
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    ||||| ||||||||||||||| |||| ||| ||||| | |||||| | ||  |||||||||  ||  |||||||||||| ||  || | |||||||||||    
T  37512003 gatgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctcaattgcttgaaaaccctc 37512102  T
Q  249 acttcatgaacatgttc 265  Q
    | || |||| |||||||    
T  37512103 aatttatgagcatgttc 37512119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 34447 - 34326
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| || |||||| ||||| | |||||||||||| | ||| |||||||| | ||  |||||  ||||||||| ||||||||||  ||||||  |||    
T  34447 atatatcagacgatatttccttcacaattctatccaaactccctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttga 34348  T
Q  241 aaaccctcacttcatgaacatg 262  Q
    |||||  ||  |||||||||||    
T  34347 aaaccaacatctcatgaacatg 34326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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