View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14309_high_2 (Length: 641)
Name: NF14309_high_2
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 12243551 - 12243855
Alignment:
| Q |
1 |
gacataagaatccctataatatcctttttgacgtgaagtgagcatcaaagtagcaccagtgatggccaaaccagaagcaacaagctccaaagcacgtgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12243551 |
gacataagaatccctataatatcctttttgacgtgaagtgagcatcaaagtagcaccagtgatggccaaaccagaagcaacaagcttcaaagcacgtgac |
12243650 |
T |
|
| Q |
101 |
caaacaccactaccatctgccattatctgtaatnnnnnnnnnn-ttgtcaatgaatttcaagaaggatcatagataaggacaacattgaaataatattca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12243651 |
caaacaccactaccatctgccattatctgtaataaaaaaaaaaattgtcaatgaatttcaagaaggatcatagataaggacaacattgaaataatattca |
12243750 |
T |
|
| Q |
200 |
caagcaaattgtagagtacttcattgatttattcatgaataaattgaaaataaaccacttctactcttgcttaaatattcccttttaattcactgaagtt |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12243751 |
caagcatattgtagagtacttcattgatttattcatgaataaattgaaaataaaccacttctactcttgcttaaatattcccttttaattcacttaagtt |
12243850 |
T |
|
| Q |
300 |
tattc |
304 |
Q |
| |
|
||||| |
|
|
| T |
12243851 |
tattc |
12243855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 447 - 624
Target Start/End: Original strand, 12243952 - 12244130
Alignment:
| Q |
447 |
ccctaaaatagtagtgatttaataataaaaagtaannnnnnnn-atgataaaaatagggttgtgagatggtgatccaaatcaaggtttgtgaaaacctaa |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12243952 |
ccctaaaatagtagtgatttaataataaaaagtaatttttttttatgataaaaatagggttgtgagatggtgatccaaatcaaggtttgtgaaaacctaa |
12244051 |
T |
|
| Q |
546 |
gagattnnnnnnntaatttacaataatttacttttaaattgtgttttacatatcaagaattagttaggcatgaatagaa |
624 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12244052 |
gagattaaaaaaataatttacaattatttacttttaaattgcgttttacatatcaagaattagttaggcatgaatagaa |
12244130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 382
Target Start/End: Original strand, 12243887 - 12243918
Alignment:
| Q |
351 |
gagtatatattagactcaaagtgtaatgatcg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12243887 |
gagtatatattagactcaaagtgtaatgatcg |
12243918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University