View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_high_21 (Length: 267)
Name: NF14309_high_21
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 21493450 - 21493706
Alignment:
| Q |
1 |
ccagttacacattgttccggatgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatactt |
100 |
Q |
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| T |
21493450 |
ccagttacacattgttccggatgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatactt |
21493549 |
T |
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| Q |
101 |
ctctggcataggaattgttgtacctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcgggagtg |
200 |
Q |
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| T |
21493550 |
ctctggcatcggaattgttgtacctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcaggagtg |
21493649 |
T |
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| Q |
201 |
acccataaacaactaccagttagatggatgcttcataatggatattctgtgcctatg |
257 |
Q |
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| T |
21493650 |
acccataaacaactaccagttagatggatgcttcataatggatattctgtgcctatg |
21493706 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 41041994 - 41041900
Alignment:
| Q |
21 |
atgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcataggaat |
115 |
Q |
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| T |
41041994 |
atgtttgatgatatagtatttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaat |
41041900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 28088700 - 28088788
Alignment:
| Q |
12 |
ttgttccggatgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatactt |
100 |
Q |
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| T |
28088700 |
ttgttcagaatgtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtaaaaaaagtagaagaatactt |
28088788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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