View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_high_29 (Length: 218)

Name: NF14309_high_29
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_high_29
NF14309_high_29
[»] chr5 (18 HSPs)
chr5 (7-218)||(37639647-37639858)
chr5 (7-218)||(37711405-37711616)
chr5 (7-218)||(37594105-37594316)
chr5 (7-218)||(37696496-37696707)
chr5 (7-218)||(37401046-37401257)
chr5 (7-216)||(37823672-37823881)
chr5 (7-216)||(37393060-37393269)
chr5 (7-216)||(37702451-37702660)
chr5 (83-216)||(37401257-37401390)
chr5 (83-216)||(37639514-37639647)
chr5 (83-216)||(37711272-37711405)
chr5 (34-216)||(37532868-37533050)
chr5 (11-216)||(37382513-37382718)
chr5 (83-216)||(37593972-37594105)
chr5 (83-216)||(37696363-37696496)
chr5 (13-146)||(37428578-37428711)
chr5 (11-104)||(37413434-37413527)
chr5 (7-164)||(37435530-37435699)
[»] chr4 (4 HSPs)
chr4 (7-218)||(16843044-16843255)
chr4 (83-216)||(16843255-16843388)
chr4 (11-216)||(16845847-16846052)
chr4 (11-216)||(24217918-24218123)
[»] chr3 (1 HSPs)
chr3 (167-216)||(14553140-14553189)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 37639858 - 37639647
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37639858 tcccaaatggtttcataagaagctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 37639759  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
      |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  37639758 gatggcattgtatactttttactctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctc 37639659  T
Q  207 acaacaattttc 218  Q
    ||||||| ||||    
T  37639658 acaacaactttc 37639647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 37711616 - 37711405
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  37711616 tcccaaatggtttcatacgaagctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattccacca 37711517  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  37711516 tctggcattcaatacttttcactctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctc 37711417  T
Q  207 acaacaattttc 218  Q
    ||||||| ||||    
T  37711416 acaacaactttc 37711405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 37594316 - 37594105
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||  |||||||||  | |||||||||| ||| |||||| |||||||||||||||||    
T  37594316 tcccaaatggtttcataagaagctcttaaactcatggaatgagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccacct 37594217  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37594216 tctggcattcaatacttttcactctcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 37594117  T
Q  207 acaacaattttc 218  Q
    ||||||| ||||    
T  37594116 acaacaactttc 37594105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 37696707 - 37696496
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| | || | || || |||||||||| ||| |||||| |||||||||||||||||    
T  37696707 tcccaaatggtttcataagaagctcttaaactcatggaaggacattcaggacttagacctcagtttcaacaagttacaaggagatcttccaattccacct 37696608  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    ||| |||||  |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37696607 tctagcattggatacttttcactctcaaacaacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 37696508  T
Q  207 acaacaattttc 218  Q
    ||||||||||||    
T  37696507 acaacaattttc 37696496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 37401046 - 37401257
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | || || |||||||||| ||| |||||| |||||||||||||||||    
T  37401046 tcccaaatggtttcataagaagctcttaaactcatggaaggacattcagtacttagacctcagtttcaacaagttacaaggagatcttccaattccacct 37401145  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  37401146 tctggcattgaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgcaagttcccttcgtaccctcaatttggctc 37401245  T
Q  207 acaacaattttc 218  Q
    ||||||| ||||    
T  37401246 acaacaactttc 37401257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 37823881 - 37823672
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||  || | |||| || |||||||||| ||| |||||| |||||||||||||||||    
T  37823881 tcccaaatggtttcataagaagctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttccaattccacct 37823782  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||  ||| |||||||||    
T  37823781 tctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagttccctttatatgctcgatttggctc 37823682  T
Q  207 acaacaattt 216  Q
    ||||||||||    
T  37823681 acaacaattt 37823672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 37393060 - 37393269
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |  ||||||| || |||||||||| ||| |||||  |||||||||||||||||    
T  37393060 tcccaaatggtttcataagaagctcttaaactcatggaaggacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacct 37393159  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
      ||||||| || ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  37393160 gatggcattgaagactttttactctcaaacaacaacttcacaggagatatttcttcaacattctgcaatgctagttccctttatatcctcaatttggctc 37393259  T
Q  207 acaacaattt 216  Q
    ||||||||||    
T  37393260 acaacaattt 37393269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 37702660 - 37702451
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||| |  ||||| | || |||||||| ||||||||||||||||||||||||||||||    
T  37702660 tcccaaatggtttcataagaaactcttaaactcatggaaggacattatacacattaacctgagtttcaaaatgttgcaaggacatcttccaattccacct 37702561  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
      |||||||  | ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||||||||    
T  37702560 catggcattgtacactttttactctcaaacaacaacttcacaggaaatatctcttcaacattctgcaatgcaagttccctttacattctcaatttggctc 37702461  T
Q  207 acaacaattt 216  Q
    ||||||||||    
T  37702460 acaacaattt 37702451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 37401257 - 37401390
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  37401257 caaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagtt 37401356  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
    ||||||||   ||| |||||||||||||||||||    
T  37401357 ccctttatgtgctcgatttggctcacaacaattt 37401390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 37639647 - 37639514
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  37639647 caaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagtt 37639548  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
    |||||||||  ||| |||||||||||||||||||    
T  37639547 ccctttatatgctcgatttggctcacaacaattt 37639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 37711405 - 37711272
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  37711405 caaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagtt 37711306  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
    ||||||||   ||| |||||||||||||||||||    
T  37711305 ccctttatgtgctcgatttggctcacaacaattt 37711272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 37533050 - 37532868
Alignment:
Q  34 aaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccaccttctggcattcaatactttttactcgca 133  Q
    |||| |||||||||  |||  |||||||||  | |||||||||| ||| |||||| |||||||||||||||||  |||||||  |||||||| |||| ||    
T  37533050 aaactcatggaatgggatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccacctgatggcattggatacttttcactctca 37532951  T
Q  134 aataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaattt 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||  ||   |||||||||||||||||||||||    
T  37532950 aataacaacttcacaggagatatttcttcaacattctgcaatgcaagttacctgaatgttctcaatttggctcacaacaattt 37532868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 37382513 - 37382718
Alignment:
Q  11 aaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccaccttctg 110  Q
    |||||||||||| ||||||||||| |||||||||  |||||||   |  ||||||| |||||||||| |||||||||| |||||||||| |||| || ||    
T  37382513 aaatggtttcatgagaagctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttccaatcccacgttatg 37382612  T
Q  111 gcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaa 210  Q
    ||||| | |||||||||||| | || ||||||||||||||||| |||  ||   |||| ||||| |||||||||||  ||   |||||||||||||||||    
T  37382613 gcatttactactttttactctcgaacaacaacttcacaggaaacattgatttttcattgtgcaacgcaagttccctgaatgtgctcaatttggctcacaa 37382712  T
Q  211 caattt 216  Q
    ||||||    
T  37382713 caattt 37382718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 37594105 - 37593972
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||  ||||||| || ||| ||||||| |||| ||||| ||||||||| |||| |||||||||||||||||||||||||    
T  37594105 caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgcaatgcaagtt 37594006  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
     |||  ||   |||||||||||||||||||||||    
T  37594005 acctgaatgttctcaatttggctcacaacaattt 37593972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 37696496 - 37696363
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||  ||||||| || ||| ||||||| |||| ||||| ||||||||| |||| |||||||||||||||||||||||||    
T  37696496 caaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgcaatgcaagtt 37696397  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
     |||  ||   |||||||||||||||||||||||    
T  37696396 acctgaatgttctcaatttggctcacaacaattt 37696363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 37428711 - 37428578
Alignment:
Q  13 atggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccaccttctggc 112  Q
    |||||||||||| | |||||||||| |||||||  | |||  | || ||||||| |||||||||| |||||||||| |||||||||||||||||| ||||    
T  37428711 atggtttcataaaatgctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttccaattccaccttatggc 37428612  T
Q  113 attcaatactttttactcgcaaataacaacttca 146  Q
    ||| |||||||||||||| | || ||||||||||    
T  37428611 attgaatactttttactctctaacaacaacttca 37428578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 37413434 - 37413527
Alignment:
Q  11 aaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccac 104  Q
    |||||||||||| ||||||||||| |||||||||  || ||||   | || ||||| |||||||||| |||||||||| |||||||||||||||    
T  37413434 aaatggtttcatgagaagctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttccaattccac 37413527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 37435699 - 37435530
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacatt----ctg--------tacattgatcttagtttcaacatgttgcaaggacatctt 94  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||     ||        |||||||| || ||||||||||  ||||||||| |  ||    
T  37435699 tcccaaatggtttcataagaagctcttaaacacattgaatgatattgcccatgaaattagttacattgacctcagtttcaacaaattgcaaggagacatt 37435600  T
Q  95 ccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaa 164  Q
    ||||||||| |   ||||||| |||||||||| ||| |||| ||||||||| ||||| | ||||||||||    
T  37435599 ccaattccatccgatggcattgaatactttttgctctcaaacaacaacttcgcaggagacatttcttcaa 37435530  T

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Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 16843044 - 16843255
Alignment:
Q  7 tcccaaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||| |  ||||||||||| ||    
T  16843044 tcccaaatggtttcataagaagctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatct 16843143  T
Q  107 tctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctc 206  Q
    | |||| ||||||||||||  ||| |||| ||||||||||||||| | |||||||||||||||||||||||||||| | |  ||   |||||||||||||    
T  16843144 tatggccttcaatacttttcgctctcaaacaacaacttcacaggagacatttcttcaacattctgcaatgcaagtttcttgaatgttctcaatttggctc 16843243  T
Q  207 acaacaattttc 218  Q
    ||||||||||||    
T  16843244 acaacaattttc 16843255  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 16843255 - 16843388
Alignment:
Q  83 caaggacatcttccaattccaccttctggcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagtt 182  Q
    |||||| |||||||||||||||||  |||||||  |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  16843255 caaggagatcttccaattccacctgatggcattgtatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgcaatgcaagta 16843354  T
Q  183 ccctttataccctcaatttggctcacaacaattt 216  Q
    ||||| ||   || ||||||||||||||||||||    
T  16843355 cccttaatttgcttaatttggctcacaacaattt 16843388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 16845847 - 16846052
Alignment:
Q  11 aaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccaccttctg 110  Q
    ||||||||||||||||||||||||||| | ||||| |||||||   ||||||| || ||||||||||  ||||||||| |  |||||||||||  || ||    
T  16845847 aaatggtttcataagaagctcttaaactcgtggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattccatattatg 16845946  T
Q  111 gcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaa 210  Q
    ||||| |||||||||| ||| |||| ||||||||||||| | |||| ||||| |||||||||| |||||||| |||   |   |||||||||||||||||    
T  16845947 gcattaaatactttttgctctcaaacaacaacttcacagaagatatgtcttccacattctgcagtgcaagtttcctgattgttctcaatttggctcacaa 16846046  T
Q  211 caattt 216  Q
    ||||||    
T  16846047 caattt 16846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 24217918 - 24218123
Alignment:
Q  11 aaatggtttcataagaagctcttaaacacatggaatgacattctgtacattgatcttagtttcaacatgttgcaaggacatcttccaattccaccttctg 110  Q
    |||||||||||| ||||||||||| |||||||||| || ||||     ||| |||| |||||||||| |||||||||| | ||||| |||||||| | ||    
T  24217918 aaatggtttcatgagaagctcttacacacatggaaggaaattcgaattattaatctcagtttcaacaagttgcaaggagaccttccgattccaccctatg 24218017  T
Q  111 gcattcaatactttttactcgcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaa 210  Q
    | ||||||||||||| |||| |||| ||||||||||||||| | ||| |||   || | |||||||||||||||||  ||   |||||||||||| ||||    
T  24218018 gaattcaatacttttcactctcaaacaacaacttcacaggagacattgctttgtcactgtgcaatgcaagttccctgaatttgctcaatttggctaacaa 24218117  T
Q  211 caattt 216  Q
    ||||||    
T  24218118 caattt 24218123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 14553189 - 14553140
Alignment:
Q  167 ttctgcaatgcaagttccctttataccctcaatttggctcacaacaattt 216  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  14553189 ttctgcaatgcaagttccctttatatgctcaatttggctcacaacaattt 14553140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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