View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_high_3 (Length: 558)
Name: NF14309_high_3
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 38936440 - 38936899
Alignment:
| Q |
18 |
cgtatgataccaaaactactcatattatgccattttgatttttattacttttgtaaattgaaagaaaattttgttagtgaatagagaaaattgatattaa |
117 |
Q |
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| T |
38936440 |
cgtatgataccaaaactactcatattatgccattttgatttttattaattttgtaaattgaaagaaaattttgttagtgaatagagaaaattgatattaa |
38936539 |
T |
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| Q |
118 |
tgtttaggaattctctttttgtttcttgaaggtatatatatgatatgagaaaattggagagttttcagtgtgcagtttctatacggattattat---att |
214 |
Q |
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| T |
38936540 |
tgtttaggaattctctttttgttacttgaaggtatat----gatatgagaaaattggagagttttcagtgtgcagtttctatacggattattattatatt |
38936635 |
T |
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| Q |
215 |
ttgtttggttccagaatacaagatagtaaaaattagaagctgtgttcaatagagagagtaattgacttttcaacataagttaatttctgagtgtccgaaa |
314 |
Q |
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| T |
38936636 |
ttgtttggttcaagaatacaagatagtaaaaattagaaggtgtgttcaatagagagagtaattgacttttcaacataagttaatttctgagtgtccaaaa |
38936735 |
T |
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| Q |
315 |
aagacttgtcactagttaggc---attgtgatttatttggtggttgtttgccactaccctaatgaagaaggaatttgatcactaagttactcaaaatgtg |
411 |
Q |
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| T |
38936736 |
aagacttgtcactagttaggctgcattgtgatttatttggtggttgtttgccactaccctaatgaagaaggaatttgatcactaagttactcaaaatgtg |
38936835 |
T |
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| Q |
412 |
atggtatcttggtttttctcttcaaaaatagcaaagagagtggcctttcctgtataagtgagag |
475 |
Q |
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| T |
38936836 |
atggtatcttgttttttctcttcaaaaatagcaaagagagtggcctttcctgtataagtgagag |
38936899 |
T |
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