View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_high_6 (Length: 431)
Name: NF14309_high_6
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 33042972 - 33043273
Alignment:
| Q |
1 |
tgagaaaaatcgagaaagccgaagagaatattaagaaatatcttctaataccatattagagcatgacactcaagagaaaaaactagctgtgattgcaata |
100 |
Q |
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| T |
33042972 |
tgagaaaaatcgagaaagccgaagagaatattaagaaatatcttctaataccgtattagagcatgacactcgagagaaaaaactagttgtgattgcaata |
33043071 |
T |
|
| Q |
101 |
tgcatttcattattgatcaaatgaactttaaagtaaacgagctagctcaccatacataagctagtgatgaagctctaactactaactgaacagtgaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33043072 |
tgcatttcattattgatcaaatgaactttaaagtaaacgagctagctcaccatccataagctagtgatgaagctctaactactaactgaacaatgaaaga |
33043171 |
T |
|
| Q |
201 |
aaacatttacaattagttagcaactaacaaccatctataacttgctaactaaaaattactcataataaatcatctatatttagtgtctaacaaacaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33043172 |
aaacatttacaattagttagcaactaacaaccatctataacttgctaactaacaattactcataataaatcatctatatttagtgtctaacaaacaatga |
33043271 |
T |
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| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
33043272 |
ct |
33043273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 33040962 - 33041028
Alignment:
| Q |
64 |
tgacactcaagagaaaaaactagctgtgattgcaatatgcatttcattattgatcaaatgaacttta |
130 |
Q |
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|||||||||||||| |||| || ||||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
33040962 |
tgacactcaagagagaaaattaattgtgattgcaagatgcatttcactattgatcatctgaacttta |
33041028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 33043352 - 33043382
Alignment:
| Q |
383 |
tgtcatgtttataaaattctaccgtcgtgat |
413 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33043352 |
tgtcatgtttataaaattctaccgtcgtgat |
33043382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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