View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_high_9 (Length: 386)

Name: NF14309_high_9
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_high_9
NF14309_high_9
[»] chr3 (28 HSPs)
chr3 (74-386)||(6945349-6945661)
chr3 (74-378)||(7585952-7586256)
chr3 (74-386)||(6942017-6942329)
chr3 (74-386)||(6523122-6523434)
chr3 (133-386)||(6528653-6528906)
chr3 (74-386)||(6841213-6841519)
chr3 (74-378)||(6781604-6781908)
chr3 (74-386)||(6556354-6556666)
chr3 (74-378)||(6733755-6734059)
chr3 (79-227)||(8588009-8588157)
chr3 (133-378)||(8452775-8453020)
chr3 (148-268)||(8469715-8469835)
chr3 (97-227)||(6481781-6481911)
chr3 (77-170)||(8570804-8570897)
chr3 (81-179)||(6257287-6257385)
chr3 (81-223)||(6898173-6898315)
chr3 (74-117)||(6530427-6530470)
chr3 (85-179)||(6243406-6243500)
chr3 (292-378)||(6481630-6481716)
chr3 (81-179)||(6723925-6724023)
chr3 (77-170)||(6450647-6450740)
chr3 (309-386)||(6796389-6796466)
chr3 (322-378)||(6730370-6730426)
chr3 (321-368)||(6450452-6450499)
chr3 (96-179)||(6593199-6593282)
chr3 (98-164)||(5262040-5262106)
chr3 (77-178)||(6730567-6730668)
chr3 (81-161)||(6851142-6851222)
[»] scaffold1643 (1 HSPs)
scaffold1643 (74-378)||(251-555)
[»] scaffold0425 (1 HSPs)
scaffold0425 (74-377)||(9411-9714)
[»] scaffold2053 (1 HSPs)
scaffold2053 (74-268)||(13-207)
[»] chr7 (1 HSPs)
chr7 (127-227)||(6575121-6575221)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 6945349 - 6945661
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  6945349 ccattggaaaggattccagctctggacaatcgtacagatacagataatgaagtttggtgaacaagtgtagtgaaaaaggcaaggaggaggaatgccatcc 6945448  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | ||||||  |||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||    
T  6945449 ttttattgaaagtctttcaagataattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacctcaacttttcaagaaagaga 6945548  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6945549 atattgattagattttggtccacggagaactcggtgtactgattatcacaaagtaataaccttttcaaatttgtcggcaattcatttaccaaaattctat 6945648  T
Q  374 cacatttctgtat 386  Q
    ||||| |||||||    
T  6945649 cacatctctgtat 6945661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 74 - 378
Target Start/End: Original strand, 7585952 - 7586256
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||||||| | |||||  |  |||  |||| ||||||||||||   |||||||||||||||||| |||||||    
T  7585952 ccattggaaacgattccagctctggacaatcgtacagacgcagagcactaagactggtgaacaagtgtagttccaaaggcaaggaggaggagtgccatcc 7586051  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | ||||||  ||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  7586052 ttttattgaaagatcacgaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaacacttcaagaaagaga 7586151  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  7586152 atattgattagattttggtccacggagaactcggtgtactgattatcacaaaggaataaacttttcaaatttgtcggcaattcatttaccaaaattctat 7586251  T
Q  374 cacat 378  Q
    |||||    
T  7586252 cacat 7586256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 6942017 - 6942329
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  6942017 ccattggaaacgattccagctctggacaatcgtacagatacagataatgaagtttggtgaacaagtgtagtgaaaaaggcaaggaggaggagtgccatcc 6942116  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | ||||||  ||| |  |||| |||||||||||||||||||||||||| ||||| |  ||| ||||  | ||||| |||  ||||||||  |||||| ||    
T  6942117 ttttattgaaagtgtagaaagggaattatagcaacgtaaatccaaagaaggacattccacaaagccagtaaaatccaacaccaactcttcgagaaaggga 6942216  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  6942217 aaattgattacattttggtgcaaggagaactcggtgtactgattataacaaaggaataaacttttcaagctggtcggcaattcatttaccaaaattctat 6942316  T
Q  374 cacatttctgtat 386  Q
    ||||| |||||||    
T  6942317 cacatctctgtat 6942329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 74 - 386
Target Start/End: Complemental strand, 6523434 - 6523122
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || ||||  |||| ||||||||||||   ||||||||||||||||||| ||| ||    
T  6523434 ccattggaaacgattccagctctggacaatcgtacagacgcagagaacgaagactggtgaacaagtgtagttccaaaggcaaggaggaggagcaccagcc 6523335  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | ||||||  ||    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||    
T  6523334 ttttattgaaagatcacgaagaaaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacttcaagtcttcaagaaaggga 6523235  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| ||||||||||||||||||||| |||| | |||| |  ||||||| |||| ||||||  || ||||||||||||||||||||||||||||    
T  6523234 aaattgattaaattttggtccacggagaactccgtgttccgattttgccaaaggagtaactttttcaggctagtcggcaattcatttaccaaaattctat 6523135  T
Q  374 cacatttctgtat 386  Q
    ||||  |||||||    
T  6523134 cacaactctgtat 6523122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 133 - 386
Target Start/End: Complemental strand, 6528906 - 6528653
Alignment:
Q  133 aacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagttta 232  Q
    ||||||||||||   |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  6528906 aacaagtgtagttccaaaggcaaggaggaggagtgccatccttttattgatagtctccaaagagaattatagcaacgtaaatccaaagaaggacatttca 6528807  T
Q  233 cacagcctctgaaatcaaacttcaactcttgaagaaagagaaaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataa 332  Q
    || |||| ||  |||| |||  |||||||| ||||||| ||||||| |||| |||||| | || ||| ||||||||||||||||||| ||||||||||||    
T  6528806 cagagccactccaatccaaccccaactcttcaagaaagggaaaatttattacattttgctgcatggataactcggtgtactgattatcacaaaggaataa 6528707  T
Q  333 ccttttcaaacttgtcggcaattcatttaccaaaattctatcacatttctgtat 386  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  6528706 ccttttcaaactcgtcggaaattcatttaccaaaattctatcacatgtctgtat 6528653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 74 - 386
Target Start/End: Complemental strand, 6841519 - 6841213
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    ||||||||||||||||||||||||||||||||| || || |||| || ||||  |||| ||||||||||||   ||||||||||||||||||| ||||||    
T  6841519 ccattggaaacgattccagctctggacaatcgtccagatacagagaacgaagactggtgaacaagtgtagttccaaaggcaaggaggaggagccccatcc 6841420  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    |  |||||  |||||   ||||||||||||||||| |||||||||||| ||||| || ||| ||||      | | || | |||||||| ||||||| ||    
T  6841419 ttctattgaaagtctttgaagagaattatagcaacttaaatccaaagaaggacatttcacagagcc------agccaattccaactcttcaagaaaggga 6841326  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  6841325 aaattgattaaattttggtccacggagaactccgtgtattgattatcacaaaggagtaaccttttcaagctggtcggcaattcatttaccaaaattctat 6841226  T
Q  374 cacatttctgtat 386  Q
    ||||| |||||||    
T  6841225 cacatctctgtat 6841213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 74 - 378
Target Start/End: Complemental strand, 6781908 - 6781604
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||    
T  6781908 ccattggaaacgattccagctctggacaatcgtacagatacagataatgaagtttggtgaacaagtgtagttccaaaggcaaggaggaggagtgccatcc 6781809  T
Q  174 tgttattgctag-tctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagag 272  Q
    | ||||||  || || || |||||||||||| ||||  ||||||||||| ||||| |||||| | || ||  |||| || |||||||| | ||||| |      
T  6781808 ttttattgaaagatcacc-aagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaatccaaattcaactcgtcaagaatggt 6781710  T
Q  273 aaaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattcta 372  Q
    | | |||| ||  ||| | ||||| |||||||||||||||||||| | | |||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  6781709 atagttgactaagtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcatttaccaaaattcta 6781610  T
Q  373 tcacat 378  Q
    ||||||    
T  6781609 tcacat 6781604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 74 - 386
Target Start/End: Complemental strand, 6556666 - 6556354
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||  ||||||||||||||||||||||||| || |||| | ||||||||||| ||||||||||||   ||||||||||||||||||| ||| ||    
T  6556666 ccattggaagggattccagctctggacaatcgtacagatacagagattgaagtttggtgaacaagtgtagttccaaaggcaaggaggaggagcaccagcc 6556567  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | ||||||  ||    | |||| ||||||||||||||||||||||||| ||||| || ||| |||| ||  |||  |||| |||| ||| ||||||| ||    
T  6556566 ttttattgaaagatcacgaagaaaattatagcaacgtaaatccaaagaaggacatttcacagagccactccaattcaactccaacgcttcaagaaaggga 6556467  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| |||||||| |||||||||||| |||||| ||||    | ||||| |||| ||||||  || ||||||||||||||||||||||||||||    
T  6556466 aaattgattaaattttggtgcacggagaactccgtgtaccgatttcgccgaaggagtaactttttcaggctagtcggcaattcatttaccaaaattctat 6556367  T
Q  374 cacatttctgtat 386  Q
    |||| ||||||||    
T  6556366 cacaattctgtat 6556354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 378
Target Start/End: Original strand, 6733755 - 6734059
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||  |||||  |||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||    
T  6733755 ccattggaaacgattccagctctggacaatcaaacaaacacagataatgaagtttggtgaacaagtgtagttccaaaggcaaggaggaggagtgccatcc 6733854  T
Q  174 tgttattgctag-tctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagag 272  Q
    | ||||||  || || || |||||||||||| ||||  ||||||||||| ||||| |||||| | || ||  |||| || |||||||| | ||||| |      
T  6733855 ttttattgaaagatcacc-aagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaatccaaattcaactcgtcaagaatggt 6733953  T
Q  273 aaaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattcta 372  Q
    | | |||| ||  ||| | ||||| |||||||||||||||||||| | | |||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  6733954 atagttgactaagtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcatttaccaaaattcta 6734053  T
Q  373 tcacat 378  Q
    ||||||    
T  6734054 tcacat 6734059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 8588009 - 8588157
Alignment:
Q  79 ggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgtta 178  Q
    ||||||||||||| |||||||||| || ||||| | ||||||| ||| ||||| ||||||||||||   |||||||||||| |||||||||||||| |||    
T  8588009 ggaaacgattccaactctggacaaccgcacaaacgaagataatcaagattggtgaacaagtgtagttccaaaggcaaggagtaggagcgccatcctttta 8588108  T
Q  179 ttgctagtctccaaagagaattatagcaacgtaaatccaaagagggaca 227  Q
    |||  ||| |||  |||||||||| |||||| | |||||||||||||||    
T  8588109 ttgaaagtttccggagagaattatggcaacgcagatccaaagagggaca 8588157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 8452775 - 8453020
Alignment:
Q  133 aacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagttta 232  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||  |||   | |||||||||||||||||  |||||||||| |||||| ||||    
T  8452775 aacaagtgtagtgaaaaagacaaggaggaggagcaccatcttgttattgaaagttcaccaagagaattatagcaacacaaatccaaagtgggacatttta 8452874  T
Q  233 cacagcctctgaaatcaaacttcaactcttgaagaaagagaaaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataa 332  Q
     | ||||  | ||||| |||| |||| ||| ||||| |  |   ||||  | | | || || ||||||||||| |||||| | || | |  || ||||||    
T  8452875 aagagccattcaaatccaactccaacacttcaagaatggtactgttgacgaaaatctgctctacggagaactccgtgtaccggttttcaagaatgaataa 8452974  T
Q  333 ccttttcaaacttgtcggcaattcatttaccaaaattctatcacat 378  Q
    | ||||||| || |||||||||||||||||||||||||||||||||    
T  8452975 ctttttcaagctggtcggcaattcatttaccaaaattctatcacat 8453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 8469715 - 8469835
Alignment:
Q  148 aaaggcaaggaggaggagcgccatcctgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaat 247  Q
    |||||||||||||||||| |||||||||||||||  ||    | ||||||| ||||||| || |||||||||||| |||| |||||| ||||| | ||||    
T  8469715 aaaggcaaggaggaggagtgccatcctgttattgaaagatcacgaagagaactatagcatcgcaaatccaaagagagacattttacagagcctataaaat 8469814  T
Q  248 caaacttcaactcttgaagaa 268  Q
    ||||||||||||||| |||||    
T  8469815 caaacttcaactcttcaagaa 8469835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 6481911 - 6481781
Alignment:
Q  97 ggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttattgctagtctccaaagag 196  Q
    ||||||| |||||| |  ||| |||| || ||||| ||||||| ||||||||| | |||||||||||||||||| ||| ||||||  ||  | | |||||    
T  6481911 ggacaattgtacaagtatagagaatggagattggtgaacaagtatagtgaaaaggacaaggaggaggagcgccaccctattattgaaagcgtacgaagag 6481812  T
Q  197 aattatagcaacgtaaatccaaagagggaca 227  Q
    ||||||| ||||| |||||||||||||||||    
T  6481811 aattataacaacgcaaatccaaagagggaca 6481781  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 8570897 - 8570804
Alignment:
Q  77 ttggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgcca 170  Q
    ||||||| |||||||||| |||||||||| |||| |  ||||||||||| ||||| ||||||||| | | ||||||||||||||||||| ||||    
T  8570897 ttggaaatgattccagctgtggacaatcggacaactctagataatgaagattggtgaacaagtgtggggtaaaaggcaaggaggaggagtgcca 8570804  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 6257287 - 6257385
Alignment:
Q  81 aaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttat 179  Q
    |||||||||||||  |||||||||||||||    ||| ||| ||| ||||| ||||||||||||| |||||||||||| || ||| |||| ||||||||    
T  6257287 aaacgattccagccatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtgccaacctgttat 6257385  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 6898173 - 6898315
Alignment:
Q  81 aaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttatt 180  Q
    |||||||||||||  ||||| |||||||||   |||| ||||||| ||||| |||||||| |||| ||| ||||||||||| ||| |||| ||||||||     
T  6898173 aaacgattccagccatggactatcgtacaacaccagagaatgaagattggtgaacaagtgcagtgcaaatggcaaggaggaagagtgccaacctgttata 6898272  T
Q  181 gctagtctccaaagagaattatagcaacgtaaatccaaagagg 223  Q
    | |||  | ||||| |||||| ||| ||  | |||||||||||    
T  6898273 gttagagtgcaaagtgaattacagctacacatatccaaagagg 6898315  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 6530470 - 6530427
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcaga 117  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  6530470 ccattggaaaggattccagctctggacaatcgtacaaatacaga 6530427  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 6243406 - 6243500
Alignment:
Q  85 gattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttat 179  Q
    |||||||||  |||||||||||||||    ||| ||| ||| ||||| ||||||||||||| ||||||||||||||| ||| |||| | ||||||    
T  6243406 gattccagcaatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggaggaagagtgccaacttgttat 6243500  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 6481716 - 6481630
Alignment:
Q  292 tccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctatcacat 378  Q
    |||||| |||||||||||| | |||| | |||||||| |||| ||||||| || ||||||||||| |||| |||||| || ||||||    
T  6481716 tccacgaagaactcggtgtgccgattttcacaaaggactaactttttcaagctggtcggcaattcctttatcaaaatgctgtcacat 6481630  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 6724023 - 6723925
Alignment:
Q  81 aaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttat 179  Q
    |||||| ||||||  ||||||||||||||||   ||| ||| ||| ||||| | ||||||||| | ||||||||||||||| ||| |||| ||||||||    
T  6724023 aaacgactccagcagtggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaaggcaaggaggaagagtgccaacctgttat 6723925  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 6450740 - 6450647
Alignment:
Q  77 ttggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgcca 170  Q
    ||||||||||||| |||||||  |||||  |||||| || | | ||||| || || ||||||||||||| ||| || |||||||||||||||||    
T  6450740 ttggaaacgattctagctctgtgcaatcagacaaatacaaagagtgaagatttgtgaacaagtgtagtgcaaagggaaaggaggaggagcgcca 6450647  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 6796466 - 6796389
Alignment:
Q  309 gtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctatcacatttctgtat 386  Q
    ||||||||| | ||||||||  ||| ||||||| ||||| ||||||||||||||||||||| || ||||  |||||||    
T  6796466 gtactgatttttacaaaggacaaactttttcaagcttgttggcaattcatttaccaaaattttaccacaactctgtat 6796389  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6730426 - 6730370
Alignment:
Q  322 caaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctatcacat 378  Q
    ||||||| |||| ||||||| || ||||||||||||||||||||||| || ||||||    
T  6730426 caaaggactaactttttcaagctagtcggcaattcatttaccaaaatgctttcacat 6730370  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 6450499 - 6450452
Alignment:
Q  321 acaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaat 368  Q
    |||||||| |||| ||||||| || |||||||||||||||||||||||    
T  6450499 acaaaggactaactttttcaagctagtcggcaattcatttaccaaaat 6450452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 6593282 - 6593199
Alignment:
Q  96 tggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttat 179  Q
    ||||||||||||||||   ||| ||| ||| ||||| | ||||||||| | ||||||||||||||| ||| |||| ||||||||    
T  6593282 tggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaaggcaaggaggaagagtgccaacctgttat 6593199  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 5262040 - 5262106
Alignment:
Q  98 gacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggagga 164  Q
    |||||||||||||||  ||| ||||||| ||||| |||||||  |||| |||||||||||| |||||    
T  5262040 gacaatcgtacaaatctagagaatgaagattggtgaacaagttcagtgcaaaaggcaaggatgagga 5262106  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 6730668 - 6730567
Alignment:
Q  77 ttggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgt 176  Q
    ||||||||||||| |||||||  |||||  |||||| || | | ||||| || || || |||||||||| ||| || ||||||||||||||||| ||| |    
T  6730668 ttggaaacgattctagctctgtgcaatcagacaaatacaaagagtgaagatttgtgaataagtgtagtgcaaagggaaaggaggaggagcgccaaccttt 6730569  T
Q  177 ta 178  Q
    ||    
T  6730568 ta 6730567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 6851222 - 6851142
Alignment:
Q  81 aaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggagga 161  Q
    |||||||||||||  ||||||||||||||||   ||| ||| ||| ||| | ||||| ||| ||| |||||||||||||||    
T  6851222 aaacgattccagccatggacaatcgtacaaaacaagagaatcaagattgttgaacaattgtggtgcaaaaggcaaggagga 6851142  T

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Target: scaffold1643 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 74 - 378
Target Start/End: Original strand, 251 - 555
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    ||||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||    
T  251 ccattggaaacgattccagctctggacaatcgtccagatacagataatgaagtttggtgaacaagtgtagttccaaaggcaaggaggaggagtgccatcc 350  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    | |||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |  ||| ||||  | ||||| || | |||||||| ||||||| ||    
T  351 ttttattgatagtctccaaagagaattatagcaatgtagatccaaagagggacattccacaaagccagtaaaatccaattgcaactcttcaagaaaggga 450  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| |||||||| |  ||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  451 aaattgattaaattttggtgcggggagaactcggtgtactgattatcacaaaggaataaccttttcaagctggtcgacaattcatttaccaaaattctat 550  T
Q  374 cacat 378  Q
    |||||    
T  551 cacat 555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 74 - 377
Target Start/End: Complemental strand, 9714 - 9411
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||||||   |||||||||||||||||  |||||||    
T  9714 ccattggaaacgattccagctctggacaatcgtacagatacagataattaagattggtgaacaagtgtagttccaaaggcaaggaggaggaatgccatcc 9615  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaaagaga 273  Q
    |  ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |  ||| ||||  | ||||| || | ||||  || ||||||| ||    
T  9614 ttgtattgatagtctccaaagagaattatagcaacgtagatccaaagagggacattccacaaagccagtaaaatccaattgcaacgattcaagaaaggga 9515  T
Q  274 aaattgattagattttggtccacggagaactcggtgtactgattataacaaaggaataaccttttcaaacttgtcggcaattcatttaccaaaattctat 373  Q
    |||||||||| |||||||||||| |||||||| |||||| |||| |  ||||||| ||| |||||||| || ||||||||||||||||||||||||||||    
T  9514 aaattgattaaattttggtccacagagaactcagtgtaccgattttgccaaaggagtaaacttttcaagctggtcggcaattcatttaccaaaattctat 9415  T
Q  374 caca 377  Q
    ||||    
T  9414 caca 9411  T

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Target: scaffold2053 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 74 - 268
Target Start/End: Complemental strand, 207 - 13
Alignment:
Q  74 ccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcc 173  Q
    ||||| ||||| |||||||||||||||||||||| | || |||| ||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||    
T  207 ccatttgaaaccattccagctctggacaatcgtatagatacagagaatgaagtttggtgaacaagtgtagtgaaaaaggcaacgaggatgagtgccatcc 108  T
Q  174 tgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaactcttgaagaa 268  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  107 ttttattgatagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacttcaactcttcaagaa 13  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 6575221 - 6575121
Alignment:
Q  127 ttggtcaacaagtgtagtgaaaaaggcaaggaggaggagcgccatcctgttattgctagtctccaaagagaattatagcaacgtaaatccaaagagggac 226  Q
    ||||| |||||||||||||||||||||||  |||||||  |||| ||| |||     ||| | | |||||||||||||||||| ||||||||||||||||    
T  6575221 ttggtgaacaagtgtagtgaaaaaggcaacaaggaggattgccaaccttttaaataaagtatgcgaagagaattatagcaacgcaaatccaaagagggac 6575122  T
Q  227 a 227  Q
    |    
T  6575121 a 6575121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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