View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14309_low_1 (Length: 967)
Name: NF14309_low_1
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 733; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 1 - 953
Target Start/End: Original strand, 33866459 - 33867395
Alignment:
| Q |
1 |
tgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaaggaaatcat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866459 |
tgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaaggaaatcat |
33866558 |
T |
|
| Q |
101 |
gcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggcaggagtgattgttttccatc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866559 |
gc----------------aaccatgaataaaaaattattctaacttaccgtgacagcggaaatcatgggtatatgaaggcaggagtgattgttttccatc |
33866642 |
T |
|
| Q |
201 |
tagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaatcattttgacatacatcatgatgatgcacaatcataaaagtttgatttttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |
|
|
| T |
33866643 |
tagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaatcattttgacatacatcatgatgatgcagaatcataaaagtttgatttgtat |
33866742 |
T |
|
| Q |
301 |
ttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866743 |
ttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttat |
33866842 |
T |
|
| Q |
401 |
aattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttcttaaattggtgatttacatggtttaa-nnnnnnnncatccatta |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
33866843 |
aattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttcttaaattggtgatttacatgttttaatttttttttcattcatta |
33866942 |
T |
|
| Q |
500 |
tgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctaaaaaaggctga |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33866943 |
tgagtatagtgtagtattttggttcattggcattgaaataataatcttgctgcatcataaataacataaagttgctcatgtactccctagaaaaggctga |
33867042 |
T |
|
| Q |
600 |
tgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttctgtaattatgtacataaattggggttaaac |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33867043 |
tgcatgatgtatctttctgtctcttttgataatttgaaag-tttttttttatctcttttaccatatgttctgtaattatgtacacaaattggtgttaaac |
33867141 |
T |
|
| Q |
700 |
tgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcatttgttttcgtgtttata |
799 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
33867142 |
tgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagtctaattgtggttcatttgttttcctgtttata |
33867241 |
T |
|
| Q |
800 |
catcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaatttgt |
899 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33867242 |
catcaacgcatgcctgatccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaattggt |
33867341 |
T |
|
| Q |
900 |
ccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
953 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33867342 |
ccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 44573971 - 44574089
Alignment:
| Q |
156 |
gcggaaatcatgggtatatgaaggcaggagtgattgttttccatctagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaatcatttt |
255 |
Q |
| |
|
|||||||||||| || ||||| | |||||| ||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||| ||| || |
|
|
| T |
44573971 |
gcggaaatcatgtatagatgaaagtaggagttcttgttttccatctagccggagtgagcagacgacgcaaacagccgctgctctcaaattaaaccatctt |
44574070 |
T |
|
| Q |
256 |
gacatacatcatgatgatg |
274 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
44574071 |
gacatacatgatgatgatg |
44574089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 890 - 954
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
890 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
954 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 101 - 953
Target Start/End: Complemental strand, 5771509 - 5770654
Alignment:
| Q |
101 |
gcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggcaggagtgattgttttccatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
5771509 |
gcaagtctttaattatgcaaccatgaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccacc |
5771410 |
T |
|
| Q |
201 |
tagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaatcattttgacatacatcatgatgatgcacaatcataaaagtttgatttttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||| | | |
|
|
| T |
5771409 |
tagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaaccatcttgacatacatcatgattatgcagaatcataaaagtttgatttgtat |
5771310 |
T |
|
| Q |
301 |
ttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5771309 |
ttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaatgagaggtaacgtttttat |
5771210 |
T |
|
| Q |
401 |
aattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttcttaaattggtgatttacatggtttaa-nnnnnnnncatccatta |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
5771209 |
aattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttcttaaattggtgatttacatgttttaatttttttttcattcatta |
5771110 |
T |
|
| Q |
500 |
tgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctaaaaaaggctga |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5771109 |
tgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctagaaaaggctga |
5771010 |
T |
|
| Q |
600 |
tgcatgatgtatctttctgtctcttttgataatttgaa--tgnnnnnnnnnnatctcttttaccatatgttctgtaattatgtacataaattggggttaa |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
5771009 |
tgcatgatgtatctttctgtctcttttgataatttgaaagttttttttttttatctcttttaccacatgttctgtaattatgtacacaaattggggttaa |
5770910 |
T |
|
| Q |
698 |
actgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcatttgttttcgtgttta |
797 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5770909 |
actgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagactaattgtggttcatttgttttcgtgttta |
5770810 |
T |
|
| Q |
798 |
tacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaattt |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5770809 |
tacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaaaaaatattagcagggttcaaagttcatgttaatagcactaattg |
5770710 |
T |
|
| Q |
898 |
gtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
953 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5770709 |
gtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 23214436 - 23214315
Alignment:
| Q |
97 |
tcatgcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggcaggagtgattgttttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23214436 |
tcatgcaagtctttaattatgcaaccatgaataaagaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttc |
23214337 |
T |
|
| Q |
197 |
catctagccggagcgagcagac |
218 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
23214336 |
catctagccggagcaagcagac |
23214315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 23216135 - 23216040
Alignment:
| Q |
1 |
tgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaaggaaa |
96 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23216135 |
tgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgctggttaaagctggtttcaaggtaaggaaa |
23216040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 8e-42; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11075733 - 11075828
Alignment:
| Q |
1 |
tgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaaggaaa |
96 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11075733 |
tgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgctggttaaagctggtttcaaggtaaggaaa |
11075828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 504 - 580
Target Start/End: Complemental strand, 5894466 - 5894390
Alignment:
| Q |
504 |
tatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5894466 |
tatagtgtagtattttggttcattggcattgagataataaccttgctccatcataaataacataaacttgctcatgt |
5894390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 571 - 746
Target Start/End: Complemental strand, 5894221 - 5894049
Alignment:
| Q |
571 |
ttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttct |
670 |
Q |
| |
|
||||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | |
|
|
| T |
5894221 |
ttgctcatgtattcactagaaaagtctgaattatgatgtatctttctgtctcttttgataattggaa---actctttgtatctcttttaccacatgtttt |
5894125 |
T |
|
| Q |
671 |
gtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactct |
746 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |||||||||||||| | || ||||| | ||||||||||| ||||||| |
|
|
| T |
5894124 |
gtaattatgcacacaaattagggttaatttgtgcataaaagttgctgacgtatgctgtatctttcttttttactct |
5894049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
424 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
482 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||| |
|
|
| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 5894614 - 5894555
Alignment:
| Q |
323 |
tcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaat |
382 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
5894614 |
tcaagaaaagaatgtgcattaccaatcgctaaccaacataaaggaggtaaatccttcaat |
5894555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 30340329 - 30340407
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaa |
91 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| ||| || ||| |||||| | ||||||| |||||| |
|
|
| T |
30340329 |
aggagtgaagtttgctgctgaagatttcaatttcctttaactgatatctctttgctggttatcgttggtttccaggtaa |
30340407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30746130 - 30746089
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30746130 |
aggaatgaagtttgctgctgaagatatcaatttcctttaact |
30746089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30432516 - 30432475
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
30432516 |
aggaatgaagtttgctgctgaagatttcaatttcctttaact |
30432475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30479971 - 30479930
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
30479971 |
aggagtgatgtttgctgctgaagatttcaatttcctttaact |
30479930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 30680842 - 30680883
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
30680842 |
aggaatgaagtttgctgctgaagatttcaatttcctttaact |
30680883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 30716982 - 30717023
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
30716982 |
aggaatgaagtttgctgctgaagatttcaatttcctttaact |
30717023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 20303061 - 20303102
Alignment:
| Q |
13 |
aggagtgaagtttgctgctgaagttatcaatttcctttaact |
54 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
20303061 |
aggagtgaaggttgctgctgaagatttcaatttcctttaact |
20303102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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