View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_10 (Length: 403)
Name: NF14309_low_10
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 35 - 387
Target Start/End: Complemental strand, 14972861 - 14972525
Alignment:
| Q |
35 |
atggtgagtggtccgaatagggtcgggcccctatcttgataaatttgaatgaacttgacctcaacaccgagacaactccatctactaacagcccagtaca |
134 |
Q |
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| T |
14972861 |
atggtgagtggtccgaatagggtcgggcccctatcttgataaattcgaatgaacttgacctcaacaccgagacaac----------------ccagtaca |
14972778 |
T |
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| Q |
135 |
ataacccgacaactttaaacatcaacaaccatttatggccaacaaatttaaggctattaggaagcaaccaaaagttatgcttagacaaccctcaacccaa |
234 |
Q |
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| T |
14972777 |
tcaacccgacaactttaagcatcatcaaccatttatggccaacaaatttaaggctattaggaagaaaccaaaagttatgcttagacaaccctcaacccaa |
14972678 |
T |
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| Q |
235 |
aagttggttttcggatctcttgggacgaagcaataaaactagaaacgaaccactatagaaagaggcggaggttcaacatgatcaactagaaccaagatcc |
334 |
Q |
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| T |
14972677 |
aagttggttttcggatctcttgggacgaagcaataaaactagaaaccaaccactatagaaagaggcggaggttcaacatgatcaactagaaccaagatcc |
14972578 |
T |
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| Q |
335 |
cgtagccctattgttgaactatcccataaaaccaggaaacctagatcctagtt |
387 |
Q |
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| T |
14972577 |
cgtagccctattgttgaactatcccataaaaccaggaaacctagatcctagtt |
14972525 |
T |
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