View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_low_12 (Length: 383)

Name: NF14309_low_12
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_low_12
NF14309_low_12
[»] chr4 (6 HSPs)
chr4 (1-242)||(50978886-50979127)
chr4 (289-376)||(50978753-50978840)
chr4 (41-145)||(22271084-22271189)
chr4 (138-248)||(51460982-51461092)
chr4 (105-144)||(10178928-10178968)
chr4 (146-258)||(19943544-19943656)
[»] chr3 (2 HSPs)
chr3 (6-246)||(4288140-4288393)
chr3 (168-237)||(861891-861960)
[»] chr7 (7 HSPs)
chr7 (3-257)||(23103066-23103332)
chr7 (75-246)||(45956282-45956454)
chr7 (145-248)||(983659-983761)
chr7 (190-246)||(7228041-7228097)
chr7 (145-237)||(2478638-2478730)
chr7 (188-246)||(16803066-16803124)
chr7 (6-42)||(45956487-45956523)
[»] scaffold0037 (1 HSPs)
scaffold0037 (6-143)||(107660-107800)
[»] chr1 (6 HSPs)
chr1 (6-246)||(15877207-15877459)
chr1 (105-237)||(15243823-15243967)
chr1 (70-143)||(33078379-33078453)
chr1 (188-237)||(47900821-47900870)
chr1 (99-142)||(19705511-19705555)
chr1 (109-144)||(23412519-23412555)
[»] chr2 (4 HSPs)
chr2 (138-246)||(25677455-25677563)
chr2 (6-246)||(25895714-25895956)
chr2 (138-246)||(24927831-24927939)
chr2 (177-255)||(33856535-33856613)
[»] chr8 (2 HSPs)
chr8 (25-119)||(25988396-25988490)
chr8 (183-246)||(25988225-25988288)
[»] chr5 (2 HSPs)
chr5 (6-143)||(27892905-27893042)
chr5 (53-138)||(43582547-43582633)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50979127 - 50978886
Alignment:
Q  1 tacattgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979127 tacattgcatctttccatatctctagcgaagcaatcctaatccacactgcaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactc 50979028  T
Q  101 acagcaagcattactagttcaaatgattaaataacactaaaaatataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaattt 200  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50979027 acaacaagcattactagttcaattgattaaataacactaaaaatataaaatcctaaataggcaccggttagatgctttagacaatgtattcactcaattt 50978928  T
Q  201 cttgttcattataagggataagtgcaacgtaataaccgacta 242  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  50978927 cttgttcattataggagataagtgcaacgtaataaccgacta 50978886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 50978840 - 50978753
Alignment:
Q  289 ttttaagatatattctaaaatagtgcgagtttctttttatttgtcttctcatgtcacattacatattgctcacgcaagcttcttctca 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978840 ttttaagatatattctaaaatagtgcgagtttctttttatttgtcttctcatgtcacattacatattgctcacgcaagcttcttctca 50978753  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 22271084 - 22271189
Alignment:
Q  41 tccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagcaagcattactagttcaaa-tgattaaataacacta 139  Q
    ||||||||||||||||||| |||| ||| | || |||||| | |  |||||||||||  || | ||| ||||| ||||||||| ||||||||||||||||    
T  22271084 tccacactacaacttcccacatcttcaaagtcattcctcaacctacatcatcaaacatccataacaaacattattagttcaaaatgattaaataacacta 22271183  T
Q  140 aaaata 145  Q
    ||||||    
T  22271184 aaaata 22271189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 51461092 - 51460982
Alignment:
Q  138 taaaaatataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||| ||||||||| ||| ||||||||  ||| | ||||||||||||  | |||||||||||| |||| ||||||  | ||||||| ||| | ||||||    
T  51461092 taaaattataaaatcgtaaataggcaccaattataagctttagacaatacaatcactcaatttcatgtttattatagtgcataagtgtaacatgataacc 51460993  T
Q  238 gactattttac 248  Q
     ||||||||||    
T  51460992 aactattttac 51460982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 10178968 - 10178928
Alignment:
Q  105 caagcattactagttcaaa-tgattaaataacactaaaaat 144  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  10178968 caagtattactagttcaaaatgattaaataacactaaaaat 10178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 19943544 - 19943656
Alignment:
Q  146 taaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactattt 245  Q
    ||||||||||| ||| ||| | ||| ||| |||||   ||| ||| |||||||| || |||||||||  | |||||||||||| | |||||| |||||||    
T  19943544 taaaatcctaaatagacactgattatatgttttaggtcatgcatttactcaattcctcgttcattatgggagataagtgcaacatgataaccaactattt 19943643  T
Q  246 tactgattatcaa 258  Q
    ||||  |||||||    
T  19943644 tactcgttatcaa 19943656  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 4288140 - 4288393
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagc 105  Q
    |||||||||||||||||   |||||||||||||||||||| || |||||||||  |||||||  | || |||||||||||||||||| ||||  || | |    
T  4288140 tgcatctttccatatcttcggcgaagcaatcctaatccacgctgcaacttcccggatctccagagtcattcctcatcttgtatcatcgaacatccataac 4288239  T
Q  106 aagcattactagttc-aaatgattaaataacactaaaa------------atataaaatcctaactaggcaccggttagatgctttagacaatgtattca 192  Q
    || |||||||||||| |||||||||| |||||||||||            ||||| |||||||| || || ||  ||||||||||||| ||||| |||||    
T  4288240 aaacattactagttcaaaatgattaattaacactaaaaacaacataaactatatataatcctaaatatgcgccaattagatgctttaggcaatgcattca 4288339  T
Q  193 ctcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    |||| |||||||||||||||  | |||||||||||||| |||||| ||||||||    
T  4288340 ctcagtttcttgttcattatgggagataagtgcaacgtgataaccaactatttt 4288393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 861960 - 861891
Alignment:
Q  168 ttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||||||||||| | ||| ||||| ||||||||| |||||||||  | |||||||||||| | ||||||    
T  861960 ttagatgctttaggccatgcattcattcaatttctcgttcattatgggagataagtgcaacatgataacc 861891  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 23103332 - 23103066
Alignment:
Q  3 cattgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcac 102  Q
    ||||||||||||||||||||  |   |||||||||||||| |  || |||||||||| ||||  |  |||| |||||||  |||||||| |||||  |||    
T  23103332 cattgcatctttccatatcttcactaaagcaatcctaatctatgctgcaacttcccagatctttagagccattcctcattctgtatcattaaacatccac 23103233  T
Q  103 agcaagcattactagttcaaa-tgattaaataacactaaaaa-----------tataaaatcctaactaggcaccggttagatgctttagacaatgtatt 190  Q
    | ||||||||||||||||||| ||| ||| ||||||||||||           ||||||||||||| |||||||   |||||||||||||||| || |||    
T  23103232 aacaagcattactagttcaaaatgaataattaacactaaaaactaattaaaactataaaatcctaaataggcactaattagatgctttagacattgcatt 23103133  T
Q  191 cactcaatttcttgttcattataagggataagtgcaacgtaataaccgactattttactgattatca 257  Q
    |||||| ||||||||| |||||  |||||||||||||| | |||||| |||||||| ||||||||||    
T  23103132 cactcattttcttgttaattatgggggataagtgcaacatgataaccaactattttgctgattatca 23103066  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 246
Target Start/End: Complemental strand, 45956454 - 45956282
Alignment:
Q  75 tcctcatcttgtatcatcaaacactcacagcaagcattactagttcaaatgattaaataacactaaaaa-tataaaatcctaactaggcaccggttagat 173  Q
    |||||| ||||||||||||||||  |||| ||| ||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||| ||||| | | ||    
T  45956454 tcctcaacttgtatcatcaaacatccacaacaaacattactagtttaaatgactaattaacacaaaaaactataaaatcctaaatagacaccgatcaaat 45956355  T
Q  174 gctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    |  |||||||||||| |||||||||||| ||||||||||    | ||| |||||||| |||||| ||||||||    
T  45956354 gtcttagacaatgtaatcactcaatttcgtgttcattatggaagttaaatgcaacgtgataaccaactatttt 45956282  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 983761 - 983659
Alignment:
Q  145 ataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactatt 244  Q
    |||||||||||| ||| ||| | ||||||||||||||   ||||||||||||||||| ||| ||||||  ||||||| ||||||||  ||||| ||||||    
T  983761 ataaaatcctaaatagacactgattagatgctttagatcgtgtattcactcaatttcctgtccattat-tgggataaatgcaacgtggtaacctactatt 983663  T
Q  245 ttac 248  Q
    ||||    
T  983662 ttac 983659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 7228097 - 7228041
Alignment:
Q  190 tcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    |||||||||||||||||||||||| | | |||||||||||| |||||| ||||||||    
T  7228097 tcactcaatttcttgttcattataggagctaagtgcaacgtgataaccaactatttt 7228041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 2478638 - 2478730
Alignment:
Q  145 ataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||| |||||| ||| ||| | ||||||| |||||   ||| ||||||| |||||||||||||||||  |||||||||||||| | ||||||    
T  2478638 ataaattcctaaatagtcactgattagatgttttaggtcatgcattcacttaatttcttgttcattatgggggataagtgcaacatgataacc 2478730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 16803124 - 16803066
Alignment:
Q  188 attcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    ||||||||||||| | |||||||||   ||||||||||||||| |||||| ||||||||    
T  16803124 attcactcaatttatcgttcattatggaggataagtgcaacgtgataaccaactatttt 16803066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 45956523 - 45956487
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatc 42  Q
    |||||||||||| |||| |||||||||||||||||||    
T  45956523 tgcatctttccaaatctttagcgaagcaatcctaatc 45956487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 107800 - 107660
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatccacactacaacttccc--aaatctccaacgccaatcctcatcttgtatcatcaaacactcaca 103  Q
    |||||| ||||||||||  || ||||||||||||||||||||| |||||||||  | |||| ||  |||| || ||||| |||||||||||||   ||||    
T  107800 tgcatcattccatatcttcagtgaagcaatcctaatccacactgcaacttcccatatatctacagagccattcatcatcatgtatcatcaaacttccaca 107701  T
Q  104 gcaagcattactagttcaaa-tgattaaataacactaaaaa 143  Q
     ||||||||||||||||||| ||||||| ||||||||||||    
T  107700 acaagcattactagttcaaattgattaattaacactaaaaa 107660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 15877459 - 15877207
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagc 105  Q
    ||||| |||||||||||  | | ||||||||||||||||  ||  | ||||||| |||||||  |||| |||||||| ||||| ||||||||  |||| |    
T  15877459 tgcatatttccatatcttcaacaaagcaatcctaatccatgctggaccttcccatatctccagagccattcctcatcatgtataatcaaacatccacaac 15877360  T
Q  106 aagcattactagttc-aaatgattaaataacactaaaaa-----------tataaaatcctaactaggcaccggttagatgctttagacaatgtattcac 193  Q
    || |||||||||||| |||||||||| ||||||||||||           ||||||||||||   || ||| | ||||||||||||| ||||| |||||     
T  15877359 aatcattactagttcaaaatgattaattaacactaaaaactacttaaagctataaaatcctagaaagccactgattagatgctttaggcaatgcattcat 15877260  T
Q  194 tcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    | ||||| |||||||||||  ||||||| || || || |||||| ||||||||    
T  15877259 taaatttattgttcattatgtgggataaatgtaatgtgataaccaactatttt 15877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 15243967 - 15243823
Alignment:
Q  105 caagcattactagttcaaa-tgattaaataacactaaaaat-----------ataaaatcctaactaggcaccggttagatgctttagacaatgtattca 192  Q
    ||||||||||||||||||| |||| ||||||||||||||||           ||||| |||||| ||| ||| | ||||||| |||||   ||| |||||    
T  15243967 caagcattactagttcaaaatgatcaaataacactaaaaattaattaaaaccataaattcctaaatagtcactgattagatgttttaggtcatgcattca 15243868  T
Q  193 ctcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||||||||||||||||||  |||||||||| ||| | ||||||    
T  15243867 ctcaatttcttgttcattatgggggataagtgtaacatgataacc 15243823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 33078453 - 33078379
Alignment:
Q  70 gccaatcctcatcttgtatcatcaaacactcacagcaagcattactagttc-aaatgattaaataacactaaaaa 143  Q
    |||| ||||||||||||||||||||||| ||| | ||||||| | |||||| |||||| ||| ||||||||||||    
T  33078453 gccattcctcatcttgtatcatcaaacattcaaaacaagcatcattagttcaaaatgagtaattaacactaaaaa 33078379  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 47900821 - 47900870
Alignment:
Q  188 attcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||||||| ||||| |||||||||| |||||||||||||||| ||||||    
T  47900821 attcactcattttctcgttcattataggggataagtgcaacgtgataacc 47900870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 19705555 - 19705511
Alignment:
Q  99 tcacagcaagcattactagttcaaa-tgattaaataacactaaaa 142  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  19705555 tcacaacaagcattactagttcaaaatgattaaataacactaaaa 19705511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 23412519 - 23412555
Alignment:
Q  109 cattactagttcaaa-tgattaaataacactaaaaat 144  Q
    ||||||||||||||| |||||||||||||||||||||    
T  23412519 cattactagttcaaaatgattaaataacactaaaaat 23412555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 25677563 - 25677455
Alignment:
Q  138 taaaaatataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||| ||||||||||||| ||||||||| |||||||  ||||  |||| | |||||||||||||||||||||||| | | |||||||||| | ||||||    
T  25677563 taaaactataaaatcctaaataggcaccgattagatgtcttaggtaatgaaatcactcaatttcttgttcattataggagttaagtgcaacatgataacc 25677464  T
Q  238 gactatttt 246  Q
     || |||||    
T  25677463 aacaatttt 25677455  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 25895714 - 25895956
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagc 105  Q
    |||||||||| ||||||  || ||||||||| ||||||||  |  | ||||||||||||  || |||  | || ||  |||| | |||||||  |||| |    
T  25895714 tgcatctttcgatatcttcagtgaagcaatcttaatccacgatgtagcttcccaaatctttaaagccttttctaattatgtaccttcaaacatccacaac 25895813  T
Q  106 aagcattactagttcaaa-tgattaaataacactaaaaa-tataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttctt 203  Q
    ||||||||||| || ||| ||||||| |||||||||||| ||||||||||||| ||  ||  | ||||||  ||||||||||| ||||||||||| ||||    
T  25895814 aagcattactattttaaaatgattaattaacactaaaaactataaaatcctaaataaacattgattagatattttagacaatgcattcactcaatatctt 25895913  T
Q  204 gttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    | ||||||| |   ||||||||||| | |||||| | ||||||    
T  25895914 gctcattatgaaaaataagtgcaacatgataaccaattatttt 25895956  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 24927939 - 24927831
Alignment:
Q  138 taaaaatataaaatcctaactaggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataacc 237  Q
    ||||| ||||||||||||| ||||||||| |||||||  ||||  |||| | |||||||||||| ||||||||| | | | |||||||||| | ||||||    
T  24927939 taaaactataaaatcctaaataggcaccgattagatgtcttaggtaatgaaatcactcaatttcctgttcattacaggagctaagtgcaacatgataacc 24927840  T
Q  238 gactatttt 246  Q
     ||||||||    
T  24927839 aactatttt 24927831  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 33856535 - 33856613
Alignment:
Q  177 ttagacaatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactattttactgattat 255  Q
    |||| ||||| | ||| ||||||| |||||||||||  | | |||||||||||| |||||| |||||||||| ||||||    
T  33856535 ttaggcaatgcaatcattcaatttattgttcattatgggagttaagtgcaacgtgataaccaactattttaccgattat 33856613  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 25988490 - 25988396
Alignment:
Q  25 agcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagcaagcattactagtt 119  Q
    |||||||||||| |||| |||||| |||||||||| |||| ||  |||| |||||||| |||||||| | |||  |||| ||| |||||||||||    
T  25988490 agcgaagcaatcgtaattcacactgcaacttcccatatcttcagagccattcctcatcatgtatcataacacatccacaacaaacattactagtt 25988396  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 25988288 - 25988225
Alignment:
Q  183 aatgtattcactcaatttcttgttcattataagggataagtgcaacgtaataaccgactatttt 246  Q
    |||| ||||||||||||||||||||||||| |  | |||||||||||| |||||  ||||||||    
T  25988288 aatgcattcactcaatttcttgttcattatgaaagctaagtgcaacgtgataacaaactatttt 25988225  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 27893042 - 27892905
Alignment:
Q  6 tgcatctttccatatctctagcgaagcaatcctaatccacactacaacttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagc 105  Q
    |||||| || || |||| |||| |||||||| | |||||| ||||||||||    |||| ||  |||| |||| |||||  |||||||||||  |||| |    
T  27893042 tgcatcatttcaaatctttagcaaagcaatcgtcatccacgctacaacttcatgtatcttcatagccattccttatcttacatcatcaaacatacacaac 27892943  T
Q  106 aagcattactagttc-aaatgattaaataacactaaaaa 143  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  27892942 aagcattactagttcaaaatgatt-aataacactaaaaa 27892905  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 43582547 - 43582633
Alignment:
Q  53 cttcccaaatctccaacgccaatcctcatcttgtatcatcaaacactcacagcaagcattactagttc-aaatgattaaataacact 138  Q
    ||||||| |||||||  || || ||||||| ||| ||||||| ||  |||| || ||||||||||||| ||||||||||||||||||    
T  43582547 cttcccagatctccagtgctaaacctcatcatgtttcatcaagcatccacaacacgcattactagttcaaaatgattaaataacact 43582633  T

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