View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_low_14 (Length: 371)

Name: NF14309_low_14
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_low_14
NF14309_low_14
[»] chr4 (9 HSPs)
chr4 (35-357)||(9582728-9583050)
chr4 (35-357)||(9588423-9588745)
chr4 (93-357)||(9568251-9568518)
chr4 (18-357)||(9594524-9594860)
chr4 (73-264)||(9573376-9573569)
chr4 (48-245)||(9603439-9603636)
chr4 (11-66)||(9568194-9568249)
chr4 (141-234)||(54295949-54296042)
chr4 (147-227)||(37894937-37895017)
[»] chr6 (17 HSPs)
chr6 (141-319)||(34279321-34279499)
chr6 (141-265)||(29123221-29123345)
chr6 (128-264)||(32745720-32745856)
chr6 (143-294)||(29152911-29153062)
chr6 (124-321)||(32973437-32973634)
chr6 (149-265)||(29144369-29144485)
chr6 (144-264)||(29149729-29149849)
chr6 (164-264)||(23216833-23216933)
chr6 (124-227)||(34281023-34281126)
chr6 (144-234)||(29299147-29299237)
chr6 (141-321)||(25320109-25320289)
chr6 (141-321)||(26149802-26149982)
chr6 (148-262)||(21379306-21379420)
chr6 (141-234)||(29130394-29130487)
chr6 (141-235)||(34259146-34259240)
chr6 (179-265)||(29136409-29136495)
chr6 (141-262)||(13339137-13339258)
[»] chr7 (2 HSPs)
chr7 (161-265)||(42445421-42445525)
chr7 (201-265)||(7792973-7793037)
[»] scaffold0134 (1 HSPs)
scaffold0134 (142-235)||(17144-17237)
[»] chr5 (5 HSPs)
chr5 (149-227)||(31788623-31788701)
chr5 (149-232)||(42405814-42405897)
chr5 (148-262)||(27174334-27174448)
chr5 (149-263)||(40548366-40548480)
chr5 (149-265)||(37512003-37512119)
[»] scaffold0054 (1 HSPs)
scaffold0054 (141-262)||(34326-34447)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 9583050 - 9582728
Alignment:
Q  35 ttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagca 134  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9583050 ttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaaggtgagca 9582951  T
Q  135 ccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||||| |||||| ||||||    
T  9582950 ccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctctt 9582851  T
Q  235 acctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctctgctagtaaaggaa 334  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | |||||||||  ||| |||     
T  9582850 atctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggat 9582751  T
Q  335 ttagaacttggtaaagaagtttt 357  Q
    || |||||||||||||| |||||    
T  9582750 ttcgaacttggtaaagacgtttt 9582728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 9588745 - 9588423
Alignment:
Q  35 ttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagca 134  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9588745 ttctagtaatcccaatcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaaggtgagca 9588646  T
Q  135 ccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||||| |||||| ||||||    
T  9588645 ccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctctt 9588546  T
Q  235 acctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctctgctagtaaaggaa 334  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | |||||||||  ||| |||     
T  9588545 atctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggat 9588446  T
Q  335 ttagaacttggtaaagaagtttt 357  Q
    || |||||||||||||| |||||    
T  9588445 ttcgaacttggtaaagacgtttt 9588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 357
Target Start/End: Original strand, 9568251 - 9568518
Alignment:
Q  93 cgccgatggagtcagtcgctgctnnnnnnngaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatc 192  Q
    ||||||||||||||||||||||        ||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9568251 cgccgatggagtcagtcgctgcaaaaaaaagaaaggtgagcacaacctgtatatctgatgatattgccttctctattctatccaaattgccttttaaatc 9568350  T
Q  193 tattaagagatttgaatgcgttcgcaaatcatggtatct---cttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttct 289  Q
    ||||||| |||||||||||||||| |||||||||| |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9568351 tattaagcgatttgaatgcgttcgtaaatcatggtctctgatcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattct 9568450  T
Q  290 caccgatgctcgtattacgatggagcatctctgctagtaaaggaattagaacttggtaaagaagtttt 357  Q
    ||| |||   | |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  9568451 cacagatatccttattacgatggagcatctcttcttctaaaggatttagaacttggtaaagaagtttt 9568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 9594860 - 9594524
Alignment:
Q  18 ttagggtttctactttcttctactaatcccaatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnn 117  Q
    |||||||||||||||| |   ||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||||||||||| || ||       
T  9594860 ttagggtttctacttttt---actgatcccaatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaa 9594764  T
Q  118 nnnnngaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgc 217  Q
         ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||| |||||||||| ||||||    
T  9594763 aaagagaaaggtgagcaccacctatatagctgatgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgc 9594664  T
Q  218 aaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcat 317  Q
    ||| |||||| |||||||  |||||||  |||||||||||||||||||  ||| ||||| ||||||| ||||||||||||  | |||||||| || | ||    
T  9594663 aaagcatggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacgggggat 9594564  T
Q  318 ctctgctagtaaaggaattagaacttggtaaagaagtttt 357  Q
    |||||||  ||||||| || |||||||||||||| |||||    
T  9594563 ctctgcttctaaaggatttcgaacttggtaaagacgtttt 9594524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 9573376 - 9573569
Alignment:
Q  73 attgcattccaatttgcaaccgccgatggagtcagtcgct-gctnnnnnnngaaaggtgagcaccaccgatatatctgatgatatt-gccttctccattc 170  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||        ||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  9573376 attgcattacaatttgcaaccgccaatggagtcagtggcttgcagaaaaaagaaaggtgagcaccacctatatacctgatgatatttgccttctccattc 9573475  T
Q  171 tatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgtt 264  Q
    |||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||| ||| |||  |||||||| |||||| | |||||||||    
T  9573476 tatccaaattgcctattaaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaattgaaaaccatcactttaagaacatgtt 9573569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 9603636 - 9603439
Alignment:
Q  48 aatcactttgcgctttcaagatctcattgcattccaatttgcaaccgccgatggagtcagtcgctgctnnnnnnngaaaggtgagcaccaccgatatatc 147  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  | |||||||| || ||||          |||||  ||||||||| ||||| |    
T  9603636 aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaaagggtagcaccacctatatacc 9603537  T
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaacc 245  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || | ||| |||||| ||||||| |||| ||||    
T  9603536 tgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctcttatctgagaacc 9603439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 9568194 - 9568249
Alignment:
Q  11 aaaaaggttagggtttctactttcttctactaatcccaatcactttgcgctttcaa 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9568194 aaaagggttagggtttctactttcttctactaatcccaatcactttgcgctttcaa 9568249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 54296042 - 54295949
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| ||||||||||| ||||||||||| |||| ||| ||||| |||||||| ||||  |||||||||||||||| | |||||||| ||||||    
T  54296042 atatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt 54295949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 37894937 - 37895017
Alignment:
Q  147 ctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    |||| ||| ||||||||||||||||||||||| | ||| | |||||| | ||| |||||||||| |||| | |||||||||    
T  37894937 ctgaagatgttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaatgtgttcactaatcatggt 37895017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 34279499 - 34279321
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||||||||||||||||||||||||||| || ||||| ||| |||||||| | ||||| |||||||| ||| | |||||||||||||| ||| ||||    
T  34279499 atatatctgatgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaatcatggtatcttttatctga 34279400  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatct 319  Q
    ||| | ||||||||||||||||||| ||||| || |  |||||| |||||| || || || ||||| ||||||||||||    
T  34279399 aaatcatcacttcatgaacatgttccacaaggatttggtatctaattctcatcgttgttcttattatgatggagcatct 34279321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 29123221 - 29123345
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||  || |||||| ||||||||||||||||| ||||||  ||||    
T  29123221 atatatctgatgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgtctga 29123320  T
Q  241 aaaccctcacttcatgaacatgttc 265  Q
    | |  |||| |||||||||||||||    
T  29123321 agatactcatttcatgaacatgttc 29123345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 32745856 - 32745720
Alignment:
Q  128 gtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    ||||| |||| | ||||| |||||||||||||||||||||| ||||| ||| | ||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32745856 gtgagtaccaactatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggt 32745757  T
Q  228 atctcttacctgaaaaccctcacttcatgaacatgtt 264  Q
     ||||||| |||||||  |||| ||||||||||||||    
T  32745756 ctctcttatctgaaaatactcatttcatgaacatgtt 32745720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 294
Target Start/End: Complemental strand, 29153062 - 29152911
Alignment:
Q  143 atatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaa 242  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||| | |||   |||||||| ||||||||||||||||  ||| || ||||||    
T  29153062 atatctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatcatggtccctcctatctgaaa 29152963  T
Q  243 accctcacttcatgaacatgttctacaagaatcttttatctagttctcaccg 294  Q
    | | |||||||||||||||||||  ||| ||| | ||||| | |||||||||    
T  29152962 aacatcacttcatgaacatgttccgcaataatttcttatccaattctcaccg 29152911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 321
Target Start/End: Complemental strand, 32973634 - 32973437
Alignment:
Q  124 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 223  Q
    |||||||||||||||  |||| |||||||| ||| ||||||  |||||||| ||||||||| |||||||| | ||| | |||||||| ||| | ||||||    
T  32973634 aaaggtgagcaccacatatatttctgatgaaatttccttctatattctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatca 32973535  T
Q  224 tggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
    |||| ||||||| |||||||||  |||||| ||||  |||||| ||| ||| | ||||||| |||||  ||  | || |||||| |||||||||||||    
T  32973534 tggtctctcttatctgaaaaccaacacttcgtgaaagtgttctgcaacaatttattatctaattctcttcgtggttcttattacaatggagcatctct 32973437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 29144369 - 29144485
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||| | ||| |||||| ||||||||| ||||| ||||||||||||  |||| |  |||    
T  29144369 gatgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttatttgaagatactc 29144468  T
Q  249 acttcatgaacatgttc 265  Q
    | |||||||||||||||    
T  29144469 atttcatgaacatgttc 29144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 29149849 - 29149729
Alignment:
Q  144 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaa 243  Q
    |||| |||||||| |||||||||||||| || ||||||||| |||||||| ||||  ||||||||||||||||||||||||||| ||||||  |||| ||    
T  29149849 tatccgatgatatagccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctgagaa 29149750  T
Q  244 ccctcacttcatgaacatgtt 264  Q
       ||||||||||| ||||||    
T  29149749 taatcacttcatgagcatgtt 29149729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 23216933 - 23216833
Alignment:
Q  164 tccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgt 263  Q
    ||||||||||| || || ||| |||||||| | |||||||||||||| |||||||||||||||| |||||||  ||| ||  |||| |||||||||||||    
T  23216933 tccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgt 23216834  T
Q  264 t 264  Q
    |    
T  23216833 t 23216833  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 34281023 - 34281126
Alignment:
Q  124 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 223  Q
    ||||||||||||| |  | ||||||||||||||||||||||| ||||| || ||||||||| |||||||| | ||| | ||||| ||  |||||||||||    
T  34281023 aaaggtgagcaccgcatacatatctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttgagtgtcttcgcaaatca 34281122  T
Q  224 tggt 227  Q
    ||||    
T  34281123 tggt 34281126  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 29299147 - 29299237
Alignment:
Q  144 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||||||||||| || || |||||||| || || |||||| |||||||| ||||| | |||||||| |||||||||||||||| ||||||    
T  29299147 tatctgatgatatagctttttccattctctcaaagttgcctcttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctctt 29299237  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 25320289 - 25320109
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  25320289 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 25320190  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  25320189 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 25320109  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 26149982 - 26149802
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  26149982 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 26149883  T
Q  241 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 321  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  26149882 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 26149802  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 21379420 - 21379306
Alignment:
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 247  Q
    ||||||||| | |||||| |||||||| || || ||| |||||||| | ||| |||||| |||||| || |||||||||| |||||||  ||||||| ||    
T  21379420 tgatgatatagtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacact 21379321  T
Q  248 cacttcatgaacatg 262  Q
     | ||||||||||||    
T  21379320 tatttcatgaacatg 21379306  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 29130394 - 29130487
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 234  Q
    ||||| || ||||||||  |||||||||||| || || |||||| |||||||| | ||| ||||||||| |||||| |||||||||| ||||||    
T  29130394 atatacctcatgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctctt 29130487  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 34259240 - 34259146
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 235  Q
    ||||| || |||||||||||||||| ||||||  |||| | ||| |||| ||| | ||| |||||| ||||||||| |||||||||| |||||||    
T  34259240 atatacctcatgatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctctta 34259146  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 29136409 - 29136495
Alignment:
Q  179 ttgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 265  Q
    |||||| |||||||| | ||| |  ||||||||||| |||||||||||| |||||||  ||||||  |||  |||||||||||||||    
T  29136409 ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttc 29136495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 13339137 - 13339258
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| ||||| ||| ||||| | |||||||||||| | ||| |||||||| |  |  |||||  ||||||||||||||||||||  ||||||  |||    
T  13339137 atatatcagatgacatttccttcacgattctatccaaacttcctcttaaatctttgtaccgatttcgatgcgttcgcaaatcatggtcactcttatttga 13339236  T
Q  241 aaaccctcacttcatgaacatg 262  Q
    |||||  ||  |||||||||||    
T  13339237 aaaccaacatctcatgaacatg 13339258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 42445421 - 42445525
Alignment:
Q  161 ttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaaca 260  Q
    ||||||||| |||| ||||| ||| |||||||| ||||| |||||||||| ||||| ||||  |||| ||||||| ||||||||| ||| ||||||||||    
T  42445421 ttctccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaaccatcatttcatgaaca 42445520  T
Q  261 tgttc 265  Q
    |||||    
T  42445521 tgttc 42445525  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 7792973 - 7793037
Alignment:
Q  201 gatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 265  Q
    ||||| |||| ||||||| ||||||||   |||||| |||||||| ||| |||||||||||||||    
T  7792973 gatttcaatgtgttcgcatatcatggtcagtcttacttgaaaaccatcatttcatgaacatgttc 7793037  T

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Target: scaffold0134 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 17237 - 17144
Alignment:
Q  142 tatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 235  Q
    |||| |||| ||||||  ||| ||||||||||| || |||||| |||||||| | |||||||||||||||||| |||||||||||| |||||||    
T  17237 tatacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctctta 17144  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31788623 - 31788701
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 227  Q
    ||||||||||||||||| |||||||| ||| | ||  |||||||| | ||  ||||||||||||| |||||||||||||    
T  31788623 gatgatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggt 31788701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 42405814 - 42405897
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctc 232  Q
    |||||||||||||| || ||| | || ||| ||||| |||||||| | ||| |||||||| |||| || |||||||||||||||    
T  42405814 gatgatattgccttatctattatgtcgaaactgcctgttaaatctttaaagcgatttgaaagcgtacgtaaatcatggtatctc 42405897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 27174448 - 27174334
Alignment:
Q  148 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 247  Q
    |||||||||| ||||||| | |||||| ||||| ||| | |||||| | ||| |||||| |||||| ||||||||||| |  || |||  |||||| |||    
T  27174448 tgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatcct 27174349  T
Q  248 cacttcatgaacatg 262  Q
    |  ||||||||||||    
T  27174348 cttttcatgaacatg 27174334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 40548366 - 40548480
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    |||||||||||||| ||||||||||  ||| | ||| |||||||| | ||| ||||||||||| |  | |||||||||| || | || ||||| || |||    
T  40548366 gatgatattgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaatgcataagtaaatcatggtctcacctatctgaagactctc 40548465  T
Q  249 acttcatgaacatgt 263  Q
    | ||||||| |||||    
T  40548466 agttcatgaccatgt 40548480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 37512003 - 37512119
Alignment:
Q  149 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 248  Q
    ||||| ||||||||||||||| |||| ||| ||||| | |||||| | ||  |||||||||  ||  |||||||||||| ||  || | |||||||||||    
T  37512003 gatgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctcaattgcttgaaaaccctc 37512102  T
Q  249 acttcatgaacatgttc 265  Q
    | || |||| |||||||    
T  37512103 aatttatgagcatgttc 37512119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 34447 - 34326
Alignment:
Q  141 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 240  Q
    ||||||| || |||||| ||||| | |||||||||||| | ||| |||||||| | ||  |||||  ||||||||| ||||||||||  ||||||  |||    
T  34447 atatatcagacgatatttccttcacaattctatccaaactccctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttga 34348  T
Q  241 aaaccctcacttcatgaacatg 262  Q
    |||||  ||  |||||||||||    
T  34347 aaaccaacatctcatgaacatg 34326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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