View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_15 (Length: 355)
Name: NF14309_low_15
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 44 - 345
Target Start/End: Original strand, 12031295 - 12031596
Alignment:
| Q |
44 |
ttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaatagtgtacctaagtagaccttgacagcttgcatataagaataatttctctt |
143 |
Q |
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| T |
12031295 |
ttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaagagtgtacctaagtagaccttgacagcttgcatataagaataatttctctt |
12031394 |
T |
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| Q |
144 |
gccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatcaatatacttgcaataccagctatc |
243 |
Q |
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| T |
12031395 |
gccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatcaatatacttgcaataccagctatc |
12031494 |
T |
|
| Q |
244 |
catcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattatgtgtgttgtagctgtccacacatttcctgttcctt |
343 |
Q |
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| T |
12031495 |
catcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattatgtgtgttgtagctgtccacacatttcctgttcttt |
12031594 |
T |
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| Q |
344 |
tg |
345 |
Q |
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| T |
12031595 |
tg |
12031596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 98 - 337
Target Start/End: Complemental strand, 241628 - 241389
Alignment:
| Q |
98 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
197 |
Q |
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| T |
241628 |
tacctaagtagctcttgacagcttgcatgtaagtataatttctcttgccagtaactgggtctggatacctatagcaatcagctacaagactgtaagtgaa |
241529 |
T |
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| Q |
198 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattacc |
297 |
Q |
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| T |
241528 |
agcagagatgcatgcaaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactacc |
241429 |
T |
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| Q |
298 |
accgttattatgtgtgttgtagctgtccacacatttcctg |
337 |
Q |
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| T |
241428 |
actgttataatgtgtgttgttgctgtccacacatttcctg |
241389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 329
Target Start/End: Original strand, 223533 - 223764
Alignment:
| Q |
98 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
197 |
Q |
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| T |
223533 |
tacctaagtagctcttgacagcttgcatgtaagtataatttcttttaccagtgattgggtctggaaacctatagcaatcagctacaagactgtaagtgaa |
223632 |
T |
|
| Q |
198 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattacc |
297 |
Q |
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| T |
223633 |
aatagagatggatgcaaaggttagtatactggctataccagctatccatcctagttgagccatagcccatgctagagccaacacccctgccccaactacc |
223732 |
T |
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| Q |
298 |
accgttattatgtgtgttgtagctgtccacac |
329 |
Q |
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| T |
223733 |
actgttatgatgtgtgttgttgccgtccacac |
223764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 51528634 - 51528438
Alignment:
| Q |
121 |
tgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatca |
220 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||| ||||| |||||||| | |||| |||||||| ||| ||||| ||||||| | | |
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| T |
51528634 |
tgcatataagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtga |
51528535 |
T |
|
| Q |
221 |
atatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattatgtgtgttgt |
317 |
Q |
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| T |
51528534 |
tcataacaagtatgccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgttattatgtgtgttgt |
51528438 |
T |
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