View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14309_low_16 (Length: 348)
Name: NF14309_low_16
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 37401575 - 37401258
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37401575 |
gatatgaacagttagccaaagattgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctagg |
37401476 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37401475 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagcc |
37401376 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
37401375 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtg |
37401276 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37401275 |
gaattggaagatctcctt |
37401258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 37823487 - 37823804
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37823487 |
gatatgaacagttagccaaagattgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctagg |
37823586 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37823587 |
aatgcttccatagaggttgttcatttgcatatccaatacatgaagagaatttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagcc |
37823686 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
37823687 |
aaatcgagcatataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtg |
37823786 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37823787 |
gaattggaagatctcctt |
37823804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 37639329 - 37639646
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
37639329 |
gatatgaacagttagccaaagattgtggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctagg |
37639428 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37639429 |
aatgcttccatagaggttgttcatttgcatatccaatacagtaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagcc |
37639528 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
37639529 |
aaatcgagcatataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtatttaatgccagaaggtg |
37639628 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37639629 |
gaattggaagatctcctt |
37639646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 37711087 - 37711404
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37711087 |
gatatgaacagttagccaaagattgtggtaatgatccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctagg |
37711186 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711187 |
aatgcttccatagaggttgttcatttgcatatccaaaacatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagcc |
37711286 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
37711287 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtg |
37711386 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37711387 |
gaattggaagatctcctt |
37711404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 37532686 - 37533000
Alignment:
| Q |
17 |
atgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaat |
116 |
Q |
| |
|
||||||||| || |||||| || ||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
37532686 |
atgaacagtgagacaaagactggggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaat |
37532785 |
T |
|
| Q |
117 |
gcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaa |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37532786 |
gtttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaa |
37532885 |
T |
|
| Q |
217 |
tcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaa |
316 |
Q |
| |
|
| ||| |||| ||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37532886 |
ttgagaacattcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatccaatgccatcaggtggaa |
37532985 |
T |
|
| Q |
317 |
ttggaagatctcctt |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37532986 |
ttggaagatctcctt |
37533000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 37593790 - 37594104
Alignment:
| Q |
17 |
atgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaat |
116 |
Q |
| |
|
||||||||| || |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
37593790 |
atgaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaat |
37593889 |
T |
|
| Q |
117 |
gcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaa |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37593890 |
gtttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaa |
37593989 |
T |
|
| Q |
217 |
tcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaa |
316 |
Q |
| |
|
| ||| |||| ||| |||| |||||||||||||||||||| || | ||||||||| ||||| |||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
37593990 |
ttgagaacattcaggtaacttgcattgcagaatgttgaagatatatctcctgtgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaa |
37594089 |
T |
|
| Q |
317 |
ttggaagatctcctt |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37594090 |
ttggaagatctcctt |
37594104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 37696181 - 37696495
Alignment:
| Q |
17 |
atgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaat |
116 |
Q |
| |
|
||||||||| || |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
37696181 |
atgaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaat |
37696280 |
T |
|
| Q |
117 |
gcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaa |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37696281 |
gtttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaa |
37696380 |
T |
|
| Q |
217 |
tcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaa |
316 |
Q |
| |
|
| ||| |||| ||| |||| |||||||||||||||||||| || | ||||||||| ||||| |||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
37696381 |
ttgagaacattcaggtaacttgcattgcagaatgttgaagatatatctcctgtgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaa |
37696480 |
T |
|
| Q |
317 |
ttggaagatctcctt |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37696481 |
ttggaagatctcctt |
37696495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 37393454 - 37393137
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||| || |||||||| ||| |
|
|
| T |
37393454 |
gatatgaacagtaagccaaacattgtggtaatggtccttccaattggtttccattcaattttatagtctcaaatatatttcctttggaaaaggttccagg |
37393355 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | | ||| ||| |||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37393354 |
aatgcttccacagaggttgttcatttgcatatccaaaatagagagataagaaaatgttcctagacattgtggaatcatacctgtcaaattgttgtgagcc |
37393255 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
|||| ||| | |||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
37393254 |
aaattgaggatataaagggaactagcattgcagaatgttgaagaaatatctcctgtgaagttgttgtttgagagtaaaaagtcttcaatgccatcaggtg |
37393155 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
37393154 |
gaattggaagatcacctt |
37393137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 37702270 - 37702583
Alignment:
| Q |
18 |
tgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatg |
117 |
Q |
| |
|
|||||| | ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37702270 |
tgaacattgagccaaagactgcggtaatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatg |
37702369 |
T |
|
| Q |
118 |
cttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37702370 |
cttccatagaggttgttcatttgcatatccaaaatagagagatgaggaaatgttcccagacattgtggaatcatacctgtcaaattgttgtgagccaaat |
37702469 |
T |
|
| Q |
218 |
cgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaat |
317 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
37702470 |
tgagaatgtaaagggaacttgcattgcagaatgttgaagagatatttcctgtgaagttgttgtttgagagtaaaaagtgtacaatgccatgaggtggaat |
37702569 |
T |
|
| Q |
318 |
tggaagatctcctt |
331 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
37702570 |
tggaagatgtcctt |
37702583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 37382896 - 37382586
Alignment:
| Q |
21 |
acagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatgctt |
120 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||| | |
|
|
| T |
37382896 |
acagtgagccaaagactgtggtaatggtccttccaatcggtttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatgtgt |
37382797 |
T |
|
| Q |
121 |
ccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaatcga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| || | ||||||||||||||||||| || |
|
|
| T |
37382796 |
ccatagaggttgttcatttgcatatccaataccgaaagagaaggaaatgttcccaagcattgtggaatcatgccagttaaattgttgtgagccaaattga |
37382697 |
T |
|
| Q |
221 |
gcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaattgg |
320 |
Q |
| |
|
|||||| |||||||| || ||||| |||| || ||||| ||||||||||||||| || |||||||||||||| |||||||| | |||| ||||| |
|
|
| T |
37382696 |
gcacattcagggaacttgcgttgcacaatgaaaaatcaatgtttcctgtgaagttgttgttcgagagtaaaaagtagtaaatgccataacgtgggattgg |
37382597 |
T |
|
| Q |
321 |
aagatctcctt |
331 |
Q |
| |
|
||||||||||| |
|
|
| T |
37382596 |
aagatctcctt |
37382586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 37435300 - 37435610
Alignment:
| Q |
21 |
acagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatgctt |
120 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||| || ||| ||| |||| |||||| |
|
|
| T |
37435300 |
acagtgagccaaagattgaggtaatggtccttctaattggttgccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatgctt |
37435399 |
T |
|
| Q |
121 |
ccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaatcga |
220 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||| ||| |||||||||||||||| |||||| || ||| |||| |||||||| ||||||| || |
|
|
| T |
37435400 |
ccattaaggttgttcatttgcatatccaaaacggaaagaaaaggaaatgttcccaggcattttggaattatgcctgtcaatttgttgtgggccaaattga |
37435499 |
T |
|
| Q |
221 |
gcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaattgg |
320 |
Q |
| |
|
|||| | | ||| || || | ||| ||| |||||||||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| | ||||||||| |
|
|
| T |
37435500 |
gcacgttcatggagcttgcttggcacaattttgaagaaatgtctcctgcgaagttgttgtttgagagcaaaaagtattcaatgccatcggatggaattgg |
37435599 |
T |
|
| Q |
321 |
aagatctcctt |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
37435600 |
aatgtctcctt |
37435610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 37413729 - 37413547
Alignment:
| Q |
27 |
agccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatgcttccatag |
126 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| || || ||||||||||| ||||||||| |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
37413729 |
agccaaagactgtggtaatggtccttccaattgatttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatac |
37413630 |
T |
|
| Q |
127 |
aggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtg |
209 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
37413629 |
aagttgttcatttgcatatccaatatagaaagagaaggaaatgttcctaggcattgtggaatcatgcctgttaaattgttgtg |
37413547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 37401252 - 37401123
Alignment:
| Q |
202 |
ttgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaa |
301 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
37401252 |
ttgttgtgagccaaattgagggtacgaagggaacttgcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattcaa |
37401153 |
T |
|
| Q |
302 |
tgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
37401152 |
tgccagaaggtggaattggaagatctcctt |
37401123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 37639652 - 37639781
Alignment:
| Q |
202 |
ttgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaa |
301 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37639652 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgttatttgagagtaaaaagtatacaa |
37639751 |
T |
|
| Q |
302 |
tgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
37639752 |
tgccatcaggtggaattggaagatgtcctt |
37639781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 37696498 - 37696630
Alignment:
| Q |
199 |
aaattgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatc |
298 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37696498 |
aaattgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttgtttgagagtgaaaagtatc |
37696597 |
T |
|
| Q |
299 |
caatgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |
|
|
| T |
37696598 |
caatgctagaaggtggaattggaagatctcctt |
37696630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 37594110 - 37594239
Alignment:
| Q |
202 |
ttgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaa |
301 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
37594110 |
ttgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttatttgagagtgaaaagtattgaa |
37594209 |
T |
|
| Q |
302 |
tgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
37594210 |
tgccagaaggtggaattggaagatctcctt |
37594239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 37711410 - 37711539
Alignment:
| Q |
202 |
ttgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaa |
301 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
37711410 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgttatttgagagtgaaaagtattgaa |
37711509 |
T |
|
| Q |
302 |
tgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
37711510 |
tgccagatggtggaattggaagatctcctt |
37711539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 37428578 - 37428640
Alignment:
| Q |
269 |
tgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
37428578 |
tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaattggaagatctcctt |
37428640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 16843573 - 16843256
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
|||||||||||| || |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||| |||| |
|
|
| T |
16843573 |
gatatgaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcatttcctttggaaaaggttttagg |
16843474 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16843473 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcctaggcattgtggaatcatacctgtcaaattgttgtgagcc |
16843374 |
T |
|
| Q |
214 |
aaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtg |
313 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
16843373 |
aaattaagcaaattaagggtacttgcattgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatacaatgccatcaggtg |
16843274 |
T |
|
| Q |
314 |
gaattggaagatctcctt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16843273 |
gaattggaagatctcctt |
16843256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 16846241 - 16845920
Alignment:
| Q |
14 |
gatatgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctagg |
113 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||| |
|
|
| T |
16846241 |
gatatgaacagttagctaaagaccgtggtaatggtccttccaattggttgccattcaactttatagtgacaaacacatttcctttggaaaaggttctagg |
16846142 |
T |
|
| Q |
114 |
aatgcttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtgga----atcatacctttcaaattgttgtg |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | ||||||||||| |
|
|
| T |
16846141 |
aatgcttccaaagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaagcattgtggaatatatcatacatattaaattgttgtg |
16846042 |
T |
|
| Q |
210 |
agccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatca |
309 |
Q |
| |
|
|||||||| ||| ||| ||| |||| ||| |||||||||| ||||| || | | ||||||||||||| |||||||| ||||||||| |||||||| | |
|
|
| T |
16846041 |
agccaaattgagaacaatcaggaaacttgcactgcagaatgtggaagacatatcttctgtgaagttgttgtttgagagcaaaaagtatttaatgccataa |
16845942 |
T |
|
| Q |
310 |
ggtggaattggaagatctcctt |
331 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
16845941 |
tatggaattggaatgtctcctt |
16845920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 24218300 - 24217991
Alignment:
| Q |
22 |
cagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatgcttc |
121 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||| |||| ||||||| |
|
|
| T |
24218300 |
cagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttc |
24218201 |
T |
|
| Q |
122 |
catagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| | ||| | |||||||||| |||||||| ||| |
|
|
| T |
24218200 |
catagaggttgttcatttgcatatccaatacagaaagataaggaaatgttcccaggcattgtggaatcgttcctgttaaattgttgttagccaaattgag |
24218101 |
T |
|
| Q |
222 |
cacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatccaatgccatcaggtggaattgga |
321 |
Q |
| |
|
|| || |||||||| |||||||| | || ||| ||||| ||||||||||||||| ||||||||| |||||||| ||| |||| |||||||| ||| |
|
|
| T |
24218100 |
caaattcagggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcgga |
24218001 |
T |
|
| Q |
322 |
agatctcctt |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24218000 |
aggtctcctt |
24217991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 16843253 - 16843121
Alignment:
| Q |
199 |
aaattgttgtgagccaaatcgagcacataaagggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtaaaaagtatc |
298 |
Q |
| |
|
||||||||||||||||||| ||| |||| | | |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
16843253 |
aaattgttgtgagccaaattgagaacattcaagaaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtttgagagcgaaaagtatt |
16843154 |
T |
|
| Q |
299 |
caatgccatcaggtggaattggaagatctcctt |
331 |
Q |
| |
|
|| ||||| || ||||||||||| ||||||| |
|
|
| T |
16843153 |
gaaggccataagatggaattggaatgtctcctt |
16843121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 14552959 - 14553189
Alignment:
| Q |
18 |
tgaacagttagccaaagattgtggtaatgctccttccaattggttgccattcaactttatagtctcaaatgcatttccttcggtaaaggttctaggaatg |
117 |
Q |
| |
|
|||||||| |||||| || ||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
14552959 |
tgaacagtgagccaatgactgtggtagtggtcctttcaattggtttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatg |
14553058 |
T |
|
| Q |
118 |
cttccatagaggttgttcatttgcatatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctttcaaattgttgtgagccaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14553059 |
attccatagaggttgttcatttgcatatccaaaatagagagaagaggaaatgtccccaggcattgtggaatcatacctgtcaaattgttgtgagccaaat |
14553158 |
T |
|
| Q |
218 |
cgagcacataaagggaactggcattgcagaa |
248 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |
|
|
| T |
14553159 |
tgagcatataaagggaacttgcattgcagaa |
14553189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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