View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_18 (Length: 302)
Name: NF14309_low_18
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 21493404 - 21493129
Alignment:
| Q |
12 |
tgcatggcaccattgcataactcaagattcaatttgatttctatgacataactgttttcatatttcaaatatgaggcacgttaccaattcaactgtgttc |
111 |
Q |
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| T |
21493404 |
tgcatggcaccattgcataactcaagattcaatttgatttctatgacataactgttttcatatttcaaatatgaggcacgttaccaattcaactgtgttc |
21493305 |
T |
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| Q |
112 |
cacactctattattggttgaaattcatagtgagattaatacaaattttaattaataatagagattattgttgaaagagggttagtgagtgtgtcgatata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493304 |
cacactctattattggttgaaattcatagtgagattaatacaaattttaattaataatagagattattgttgaaagagggttagtgagtgtgtcgatata |
21493205 |
T |
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| Q |
212 |
acaattatcattcttgatgttcacagagtacttgttagcattttctattgaaagttacctcggttggtgaaggacc |
287 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21493204 |
acaattatcattcttgatgtccacagagtacttgttagcattttctactgaaagttacctcggttggtgaaggacc |
21493129 |
T |
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