View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_19 (Length: 295)
Name: NF14309_low_19
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 45934620 - 45934862
Alignment:
| Q |
18 |
gtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatacttgagattgt |
117 |
Q |
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| T |
45934620 |
gtattggtattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacatctgaaatactccaatgtccgagggaaaatacttgagattgt |
45934719 |
T |
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| Q |
118 |
tcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactcgttttcttt |
217 |
Q |
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| T |
45934720 |
ttttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggt---acaactcgttttcttt |
45934816 |
T |
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| Q |
218 |
gctctacattaatttttgcaagttttaccccactgtctaactatct |
263 |
Q |
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| T |
45934817 |
gctctacattaatttttgcaagttttactccactgtctaactatct |
45934862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 15816853 - 15817095
Alignment:
| Q |
18 |
gtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatacttgagattgt |
117 |
Q |
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| T |
15816853 |
gtattggtattccatctgataaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatacttgagattgt |
15816952 |
T |
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| Q |
118 |
tcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactcgttttcttt |
217 |
Q |
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| T |
15816953 |
tcttgcatgccgcttctttatctaccaatatggaattgtctaccacctgaatattgcgcgtcgtagcaaaaatattctggtacaacaacttgttttcttt |
15817052 |
T |
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| Q |
218 |
gctctacattaatttttgcaagttttaccccactgtctaacta |
260 |
Q |
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| T |
15817053 |
gttctaccttaatttttgcaaattttacccctccgtctaacta |
15817095 |
T |
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