View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_20 (Length: 286)
Name: NF14309_low_20
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 3174123 - 3174261
Alignment:
| Q |
142 |
taacctttgaaggtgtatacaggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcact |
241 |
Q |
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| T |
3174123 |
taacctttgaaggtgtatacaggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcact |
3174222 |
T |
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| Q |
242 |
acaacaactcaaagggttactaggaatagttcatctcac |
280 |
Q |
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| T |
3174223 |
acaacaactcaaagggttactaggaatagttcatttcac |
3174261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 3173956 - 3174027
Alignment:
| Q |
18 |
aaattacaataattttttccccaccaagtgggtttatttttaaaaattaaagatg-aactttggaaatttaa |
88 |
Q |
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| T |
3173956 |
aaattacaataatttttgccccaccaagtgggtttatttctgaaaattaaaaatgaaactttgaaaatttaa |
3174027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 32966182 - 32966275
Alignment:
| Q |
157 |
tatacaggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaact |
250 |
Q |
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| T |
32966182 |
tatacaggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaact |
32966275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 44012991 - 44012884
Alignment:
| Q |
161 |
caggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaactcaaagggtta |
260 |
Q |
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| T |
44012991 |
caggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggtta |
44012892 |
T |
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| Q |
261 |
ctaggaat |
268 |
Q |
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|| ||||| |
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| T |
44012891 |
cttggaat |
44012884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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