View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_27 (Length: 253)
Name: NF14309_low_27
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 21927191 - 21927427
Alignment:
| Q |
17 |
agttagttatattattgactaaaaatttgataattgagcatgacataatagctgttattatacatgatttgatgtttccgaaatataaataacaaaaact |
116 |
Q |
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| T |
21927191 |
agttagttatattattgactaaaaatttgataattgagcatgacataatagttgttattatacatgatttgatgtttccaaaatataaataacaaaaact |
21927290 |
T |
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| Q |
117 |
ttgaagtaatttagttttcttattatcacatcaaatatatttttgataaaaatgatttaatatctcttgttgaatcccttacaatataatagatcaaaaa |
216 |
Q |
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| T |
21927291 |
ttgaagtaatttagttttcttattatcacatcaaatatattttagataaaaattatttaatatctcttgttgaatccattacaatataatagatcaaaaa |
21927390 |
T |
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| Q |
217 |
atacagacaaaaaagaacaagtccagctaatgtaatt |
253 |
Q |
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| T |
21927391 |
atacagacaaaaaagaacaaatccagctaatgtaatt |
21927427 |
T |
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Back To:
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 15390551 - 15390693
Alignment:
| Q |
39 |
aaatttgataattgagcatgacataatagctgttattatacatgatttgatgtttccgaaatataaataacaaaaactttgaagtaatttagttttctta |
138 |
Q |
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|||||| |||||||||||||| ||||||| ||| ||| |||||| ||||||||||| ||| |||||||| |||||||| ||| || || || |||||| |
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| T |
15390551 |
aaattttataattgagcatgatataatagttgtcattgaacatgagttgatgtttccaaaagataaataataaaaacttcgaaatagttcagacttctta |
15390650 |
T |
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| Q |
139 |
ttatcacatcaaatatatttttgataaaaatgatttaatatct |
181 |
Q |
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| T |
15390651 |
ttatcacattagataaattgatgataagaattatttaatatct |
15390693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 17667017 - 17667077
Alignment:
| Q |
159 |
ttgataaaaatgatttaatatctcttgttgaatcccttacaatataatagatcaaaaaata |
219 |
Q |
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||||||| ||| |||||| |||| ||||||| ||| ||||||||||||||| |||||||| |
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| T |
17667017 |
ttgataagaattatttaaaatcttttgttgactccaatacaatataatagataaaaaaata |
17667077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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