View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14309_low_28 (Length: 253)

Name: NF14309_low_28
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14309_low_28
NF14309_low_28
[»] chr1 (3 HSPs)
chr1 (4-236)||(52169226-52169458)
chr1 (4-68)||(16354319-16354383)
chr1 (4-68)||(22411343-22411407)
[»] chr8 (4 HSPs)
chr8 (4-68)||(24967489-24967553)
chr8 (4-68)||(1990279-1990343)
chr8 (4-68)||(29003867-29003931)
chr8 (4-40)||(21139902-21139938)
[»] chr4 (1 HSPs)
chr4 (4-68)||(12807972-12808036)
[»] chr3 (2 HSPs)
chr3 (4-68)||(6237094-6237158)
chr3 (6-68)||(10850509-10850571)
[»] chr7 (7 HSPs)
chr7 (6-68)||(39388971-39389033)
chr7 (4-68)||(4090935-4090999)
chr7 (4-60)||(11997136-11997192)
chr7 (4-68)||(9193806-9193870)
chr7 (4-68)||(9562169-9562233)
chr7 (4-68)||(8780237-8780301)
chr7 (4-56)||(8787088-8787140)
[»] chr6 (1 HSPs)
chr6 (4-57)||(20105428-20105481)
[»] chr5 (2 HSPs)
chr5 (4-68)||(24165487-24165551)
chr5 (4-68)||(34222922-34222986)
[»] chr2 (2 HSPs)
chr2 (4-58)||(30949056-30949110)
chr2 (4-32)||(25858414-25858442)
[»] scaffold0074 (1 HSPs)
scaffold0074 (4-32)||(54067-54095)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 52169226 - 52169458
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggtttttcgaaggcactgtacacagagattgctggtgttc 103  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52169226 tctaatttcaccgtttttataataaattagcaattattaagctaagaagcgaacgcggagggtttttcgaaggcactgtacacagagattgctggtgttc 52169325  T
Q  104 atcgataacagtggacatgcttggactatgacagctcacattgaagctgaccgtgaacatattagatttggcggacgttggaaaagttttcgtaatgcac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52169326 atcgataacagtggacatgcttggactatgacagctcacattgaagctgaccgtgaacatattagatttggcggacgttggaaaagttttcgtaatgcac 52169425  T
Q  204 gaaatttgtatgttgggcaggccattacgtttg 236  Q
    |||||||||||||||||||||||||||||||||    
T  52169426 gaaatttgtatgttgggcaggccattacgtttg 52169458  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 16354319 - 16354383
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  |||||||    
T  16354319 tctaatttcaccgtttttataatgaattagcaattactaagctaagaagcgaacgccgagggttt 16354383  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 22411343 - 22411407
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    |||||||||| |||||||||||| |||| ||||||||| ||||||||||| |||  |||||||||    
T  22411343 tctaatttcaacgtttttataatgaatttgcaattactaagctaagaagcaaacatgaagggttt 22411407  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 24967489 - 24967553
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||    
T  24967489 tctaatttcaccgtttttataatgaattagcaattactaagctaagaagcgaacgcggagggttt 24967553  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 1990343 - 1990279
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| ||||| |||||||  | ||||||||||||| || |||||||    
T  1990343 tctaatttcaccgtttttataatgaattaacaattaccaaactaagaagcgaacacggagggttt 1990279  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 29003867 - 29003931
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||| | ||||||||| |||||||||||| | ||||| ||||||||| || |||||||    
T  29003867 tctaatttcacaggttttataatgaattagcaattagtaagctaggaagcgaacacggagggttt 29003931  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 21139902 - 21139938
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattac 40  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  21139902 tctaatttcaccgtttttataatgaattaacaattac 21139938  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 12808036 - 12807972
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||    
T  12808036 tctaatttcaccgtttttataatgaattagcaattactaagctaagaagcgaacgcggagggttt 12807972  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 6237094 - 6237158
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||    
T  6237094 tctaatttcaccgtttttataatgaattaacaattactaagctaagaagcgaatgcggagggttt 6237158  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 10850571 - 10850509
Alignment:
Q  6 taatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||| | |||||||    
T  10850571 taatttcaccgtttttataatgaattagcaattactaatctaagaagcgaacgtggagggttt 10850509  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 39388971 - 39389033
Alignment:
Q  6 taatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||| ||||    
T  39388971 taatttcaccggttttataatgaattagcaattactaagctaagaagcgaacacgaagagttt 39389033  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 4090935 - 4090999
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||  |||||||    
T  4090935 tctaatttcaccgtttttataatgaatcagcaattactaaactaagaagcgaacgcagagggttt 4090999  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 11997192 - 11997136
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcg 60  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||    
T  11997192 tctaatttcaccggttttataatgaattagcaattactaagctaggaagcgaacgcg 11997136  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 9193870 - 9193806
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    |||||||||| |||||||||||| ||||| |||||||  | |||||||||||||||| |||||||    
T  9193870 tctaatttcatcgtttttataatgaattaacaattaccaaactaagaagcgaacgcggagggttt 9193806  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 9562169 - 9562233
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    |||||||||||| |||||||||| ||||| |||||||  | |||||||||||||||| |||||||    
T  9562169 tctaatttcaccatttttataatgaattaacaattaccaaactaagaagcgaacgcggagggttt 9562233  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 8780301 - 8780237
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    |||||||||||| | |||||||| ||||| |||||||  | |||||||||||||||| |||||||    
T  8780301 tctaatttcaccatatttataatgaattaacaattaccaaactaagaagcgaacgcggagggttt 8780237  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 8787140 - 8787088
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaa 56  Q
    ||||||||| ||||||||||||| ||||| |||||||  | ||||||||||||    
T  8787140 tctaatttctccgtttttataatgaattaacaattaccaaactaagaagcgaa 8787088  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 20105481 - 20105428
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaac 57  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  20105481 tctaatttcactgtttttataatcaattagcaattactaagctaagaagcgaac 20105428  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 24165487 - 24165551
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||||||||||||||| |||||||||||  | ||||||||||| |||||  |||||||    
T  24165487 tctaatttcaccgtttttataatgaattagcaattgttaagctaagaagctaacgcagagggttt 24165551  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 34222986 - 34222922
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacgcgaagggttt 68  Q
    ||||||||||| ||||||||||| |||||  |||||   | |||||||||||||||| |||||||    
T  34222986 tctaatttcactgtttttataatgaattaataattaacaaactaagaagcgaacgcggagggttt 34222922  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 30949110 - 30949056
Alignment:
Q  4 tctaatttcaccgtttttataataaattagcaattactgagctaagaagcgaacg 58  Q
    |||||||||||  |||||||||| |||||| ||||||| ||||||||||||||||    
T  30949110 tctaatttcactatttttataatgaattagtaattactaagctaagaagcgaacg 30949056  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 25858442 - 25858414
Alignment:
Q  4 tctaatttcaccgtttttataataaatta 32  Q
    |||||||||||||||||||||||||||||    
T  25858442 tctaatttcaccgtttttataataaatta 25858414  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 54095 - 54067
Alignment:
Q  4 tctaatttcaccgtttttataataaatta 32  Q
    |||||||||||||||||||||||||||||    
T  54095 tctaatttcaccgtttttataataaatta 54067  T

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