View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_29 (Length: 239)
Name: NF14309_low_29
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 54218217 - 54217990
Alignment:
| Q |
12 |
catcatcatgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaattttcgagtttccttcgagcgtccttttgatggtttcttatgcattgc |
111 |
Q |
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| T |
54218217 |
catcatcatgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaatgttcgagtttccttcgagcgtccttttgatggtttcttatgcattgc |
54218118 |
T |
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| Q |
112 |
atttttacgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcccatctgatatttttaaatcataacaacaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218117 |
atttttacgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcccatctgatatttttaaatcataacaacaaga |
54218018 |
T |
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| Q |
212 |
ttaatattctccttcatcaattcatttc |
239 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
54218017 |
ttaatattctccttcatcaattcatttc |
54217990 |
T |
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