View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14309_low_34 (Length: 208)
Name: NF14309_low_34
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_34 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 45935230 - 45935037
Alignment:
| Q |
15 |
gaagccaagaaacagaagtgccttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatgaaaagcatctgatgcccataagaa |
114 |
Q |
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| T |
45935230 |
gaagccaagaaatagaagtgccttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatggaaagcatctgatgcccataagaa |
45935131 |
T |
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| Q |
115 |
aattcatgcaaacatcagaaattatattttttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgat |
208 |
Q |
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| T |
45935130 |
aattcatgcaaacatcagaaattatattttttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgat |
45935037 |
T |
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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 15817459 - 15817265
Alignment:
| Q |
15 |
gaagccaagaaacagaagtgccttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatgaaaagcatctgatgcccataagaa |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||| ||| |||||||| |||||| ||| |
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| T |
15817459 |
gaagccgagaaacagaagtgccttgagaatacggaacatgagctgaaagtcggtaccaaatcttcgtctacccatggaaaccatctgatacccatatgaa |
15817360 |
T |
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| Q |
115 |
aattcatgcaaacatcagaaattatattt-tttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgat |
208 |
Q |
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| T |
15817359 |
agttcatccaaacatcagaaattagatttattcatactgtaattttaactatgcaacctctactatggtctaatctaatgctcgtcttgcttgat |
15817265 |
T |
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