View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14309_low_6 (Length: 534)
Name: NF14309_low_6
Description: NF14309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14309_low_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 48 - 520
Target Start/End: Original strand, 28184384 - 28184856
Alignment:
| Q |
48 |
ttcagatcccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28184384 |
ttcagatcccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaat |
28184483 |
T |
|
| Q |
148 |
tgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccaataggtgttccttgaaagttaccaccatgtatggcct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28184484 |
tgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccgataggtgttccttgaaagttaccaccatgtatggcct |
28184583 |
T |
|
| Q |
248 |
tgttccttgaaacatcgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28184584 |
tgttccttgaaacatcgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaag |
28184683 |
T |
|
| Q |
348 |
ccattgaggtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttcca |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28184684 |
ccattgaggtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatcagtctcgtgtaacttcttagcggctttaacataagcgcttcca |
28184783 |
T |
|
| Q |
448 |
tccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgat |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28184784 |
tccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgat |
28184856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 42609780 - 42609985
Alignment:
| Q |
58 |
ttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaaca |
157 |
Q |
| |
|
||||| || |||||||||||||| || | || ||||| ||| | |||||||| || ||||| || | ||||| |||||||||| |||||||||||||| |
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|
| T |
42609780 |
ttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcagtgaattgagcaaaca |
42609879 |
T |
|
| Q |
158 |
tgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccaataggtgttccttgaaagttaccaccatgtatggccttgttccttga |
257 |
Q |
| |
|
| |||||||| || | ||||| |||||||||||||| ||||| || || ||||| ||||| ||||| || || || ||||| | ||||| | |||||| |
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|
| T |
42609880 |
taagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatgaagtgccttatcccttga |
42609979 |
T |
|
| Q |
258 |
aacatc |
263 |
Q |
| |
|
|||||| |
|
|
| T |
42609980 |
aacatc |
42609985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 42610164 - 42610213
Alignment:
| Q |
442 |
cttccatccaaaatatgctccataatagcagcagcttcaatttgaccagg |
491 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42610164 |
cttccatctaaaatatgttccataatagcagcagcctcaatttgaccagg |
42610213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 28185058 - 28185027
Alignment:
| Q |
19 |
aaggaagcttttcaacttgctggcattggttc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
28185058 |
aaggaagcttttcaacttgctggcattggttc |
28185027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 48 - 520
Target Start/End: Complemental strand, 40945035 - 40944563
Alignment:
| Q |
48 |
ttcagatcccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaat |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40945035 |
ttcagctcccttgaaaccataatccaaactaggatttctactcgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaat |
40944936 |
T |
|
| Q |
148 |
tgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccaataggtgttccttgaaagttaccaccatgtatggcct |
247 |
Q |
| |
|
||||||||||| ||||| || || || || ||||| ||||| || || ||||| || ||||||||||| |||||||||||||| |||||||| | || | |
|
|
| T |
40944935 |
tgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatggatactccaataggcgttccttgaaagtttccaccatgcaaagctt |
40944836 |
T |
|
| Q |
248 |
tgttccttgaaacatcgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaag |
347 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||||||| |||||||||||| |
|
|
| T |
40944835 |
tgtttcttgaaacatcaatcaaggggttgtcgttgacagagttgatctctctctcaattgacttggtagagaatctaatcacttcaaccaaaggaccaag |
40944736 |
T |
|
| Q |
348 |
ccattgaggtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttcca |
447 |
Q |
| |
|
|||||| |||||||||||||| ||||| | ||||||||| || || ||||| ||||| |||| || ||||| ||| | ||||| |||||||| |||||| |
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|
| T |
40944735 |
ccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatccatctcatgcaactttttatctgctttgacataagcacttcca |
40944636 |
T |
|
| Q |
448 |
tccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgat |
520 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||| |
|
|
| T |
40944635 |
tccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaacttgtgtgtcaaatgat |
40944563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 48 - 520
Target Start/End: Complemental strand, 40959000 - 40958528
Alignment:
| Q |
48 |
ttcagatcccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaat |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40959000 |
ttcagctcccttgaaaccataatccaaactaggatttctacttgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaat |
40958901 |
T |
|
| Q |
148 |
tgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccaataggtgttccttgaaagttaccaccatgtatggcct |
247 |
Q |
| |
|
||||||||||| ||||| || || || || ||||| ||||| || || ||||| || ||||||||||| ||||||||||| || |||||||| | || | |
|
|
| T |
40958900 |
tgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatggatactccaataggcgttccttgaaattttccaccatgcaaagctt |
40958801 |
T |
|
| Q |
248 |
tgttccttgaaacatcgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaag |
347 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||||||| |||||||||||| |
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|
| T |
40958800 |
tgtttcttgaaacatcaatcaaggggttgtcgttgacagagttgatctctctctcaattgacttggtagagaatctaatcacttcaaccaaaggaccaag |
40958701 |
T |
|
| Q |
348 |
ccattgaggtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttcca |
447 |
Q |
| |
|
|||||| |||||||||||||| ||||| | ||||||||| || || ||||| ||||| |||| || ||||| ||| | ||||| |||||||| |||||| |
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|
| T |
40958700 |
ccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatccatctcatgcaactttttatctgctttgacataagcacttcca |
40958601 |
T |
|
| Q |
448 |
tccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgat |
520 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||| |
|
|
| T |
40958600 |
tccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaacttgtgtgtcaaatgat |
40958528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 56 - 404
Target Start/End: Complemental strand, 43216774 - 43216426
Alignment:
| Q |
56 |
ccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaa |
155 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||| |||||| || |||| |||||||| || || ||||| || | ||||| ||||| ||||| |
|
|
| T |
43216774 |
ccttaaaaccataatccagacttgggtttctaccagcagaaagatttgacggcagcccattgttatacaagtcattgactaactcagtaaattgcgcaaa |
43216675 |
T |
|
| Q |
156 |
catgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccaataggtgttccttgaaagttaccaccatgtatggccttgttcctt |
255 |
Q |
| |
|
| |||||| || || |||| || ||||||||| || ||||||||||||||||| || || ||||| || |||||||||| || ||||| | | || |
|
|
| T |
43216674 |
gacgagttttccaattgaagtaacagctaaacgtacattatccattgaaactccaattggggtgccttggaaattaccaccatttagagccttatccgtt |
43216575 |
T |
|
| Q |
256 |
gaaacatcgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgag |
355 |
Q |
| |
|
| ||||| |||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| | || ||||||||| ||||| ||||| |||| |
|
|
| T |
43216574 |
gccacatcaatcagaggattgtcgttcactgaatttatctccctttcaatcgatttggtcgaaaaccggataacttcaatctgtggaccgagccactgag |
43216475 |
T |
|
| Q |
356 |
gtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatc |
404 |
Q |
| |
|
| |||||| ||| ||||||||||||| | ||||||| ||||| ||||| |
|
|
| T |
43216474 |
gagaagttacaagagcataacgatcttttctaggcttctgcaatggatc |
43216426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 97 - 393
Target Start/End: Complemental strand, 40549703 - 40549407
Alignment:
| Q |
97 |
agattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgt |
196 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | |||||| | ||||||||| | | || || || | ||| | |||||| | || || | |
|
|
| T |
40549703 |
agatttgaaggcaaaccattgttgtaaaaatcattaaccaactcagacatttgagcaaaaagtaactttccaatagcagccaaagctaatcttgtattat |
40549604 |
T |
|
| Q |
197 |
ccattgaaactccaataggtgttccttgaaagttaccaccatgtatggccttgttccttgaaacatcgatcaaagggttgtcgttgaccgagttaatctc |
296 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||| |||||||| | || ||||||||| ||||| |||||||| || || || || || |||||||| |
|
|
| T |
40549603 |
ccatagaaacaccaattggtgtaccttgaaagtttccaccatgcaaagctttgttccttttcacatcaatcaaaggattatcattcacagaattaatctc |
40549504 |
T |
|
| Q |
297 |
tctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagttctaagtgcataacgatcttgtttaggcttt |
393 |
Q |
| |
|
||| ||||| || || || ||| | || || |||||||| ||||| | |||||| |||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
40549503 |
tctctcaattgattttgttgaatacctaataacttcaatttgtggacctaaccattgcggtgaagtcctaagtgcatatctatcttgtttaggcttt |
40549407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 520
Target Start/End: Complemental strand, 40549350 - 40549280
Alignment:
| Q |
450 |
caaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgat |
520 |
Q |
| |
|
||||||||| ||||| | || |||||||||||||||||||| ||||| ||||| ||||| || ||||||| |
|
|
| T |
40549350 |
caaaatatgttccatcaaggctgcagcttcaatttgaccaggatgatgtttcaatttatgtgttaaatgat |
40549280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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