View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_high_11 (Length: 328)

Name: NF1430_high_11
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_high_11
NF1430_high_11
[»] chr2 (4 HSPs)
chr2 (48-216)||(35045329-35045497)
chr2 (45-216)||(35105165-35105336)
chr2 (45-187)||(35054315-35054457)
chr2 (53-191)||(35177200-35177338)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 35045329 - 35045497
Alignment:
Q  48 agctcaattttagaagcttttctagttcttctatccgaggttgcatcccaacaagatcattggtcaaccttgagaatttttgatccaatgttttaatcac 147  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || |||| |||| ||||||||| ||||||||| |||| |||||    
T  35045329 agctcaattttagaagcttttctaattcttctatgcgaggttgcatcccaacaagaccactggtaaaccctgagaatttatgatccaatttttttatcac 35045428  T
Q  148 ttgttgaacaatcttttcaatctctgtaaactctggcctgaaagtggaaaaacaagaacactaaactaa 216  Q
    |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  35045429 tgcttgaacaattttttcaatctctgtaaactctggcctgaaagtggaaaaacatgaaaaataaactaa 35045497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 35105165 - 35105336
Alignment:
Q  45 ctgagctcaattttagaagcttttctagttcttctatccgaggttgcatcccaacaagatcattggtcaaccttgagaatttttgatccaatgttttaat 144  Q
    ||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |||| ||||||||| ||    
T  35105165 ctgagctcaattttagaagcttttctaattgttctatgcgaggttgcatcccaacgagatcattggtaaaccctgagaatttatgattcaatgtttttat 35105264  T
Q  145 cacttgttgaacaatcttttcaatctctgtaaactctggcctgaaagtggaaaaacaagaacactaaactaa 216  Q
     |||   |||||||| ||||| |||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  35105265 tactgcctgaacaattttttcgatctctgtgaactctggcctgaaagaagaaaaacaagaacactaaactaa 35105336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 35054315 - 35054457
Alignment:
Q  45 ctgagctcaattttagaagcttttctagttcttctatccgaggttgcatcccaacaagatcattggtcaaccttgagaatttttgatccaatgttttaat 144  Q
    ||||||| ||||| | |||  |||||| |||||||| |||||||||  || ||| ||| ||||  |  |||| ||||||||| ||| |||||||||| ||    
T  35054315 ctgagcttaatttcaaaagactttctaattcttctacccgaggttgtgtcgcaataaggtcatcagcaaaccctgagaatttatgacccaatgtttttat 35054414  T
Q  145 cacttgttgaacaatcttttcaatctctgtaaactctggcctg 187  Q
    ||| |  |||||||| |||||||| |||  |||||||||||||    
T  35054415 cacctcctgaacaatattttcaatttctcgaaactctggcctg 35054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 35177200 - 35177338
Alignment:
Q  53 aattttagaagcttttctagttcttctatccgaggttgcatcccaacaagatcattggtcaaccttgagaatttttgatccaatgttttaatcacttgtt 152  Q
    ||||| |||||  |||||| ||||||||  |||||||| ||||| | ||| ||||  |  |||| ||||||||| ||| |||||||||| || || || |    
T  35177200 aatttcagaagactttctaattcttctactcgaggttgtatcccgataaggtcatcagcaaaccctgagaatttatgacccaatgtttttattacctgct 35177299  T
Q  153 gaacaatcttttcaatctctgtaaactctggcctgaaag 191  Q
    ||||||| | || |||||||  |||||||||||||||||    
T  35177300 gaacaatatcttgaatctctcgaaactctggcctgaaag 35177338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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