View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_high_14 (Length: 291)

Name: NF1430_high_14
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_high_14
NF1430_high_14
[»] scaffold0314 (2 HSPs)
scaffold0314 (18-107)||(19786-19877)
scaffold0314 (115-195)||(19384-19464)
[»] chr1 (7 HSPs)
chr1 (196-249)||(46312065-46312118)
chr1 (192-243)||(14512669-14512720)
chr1 (196-245)||(2999491-2999540)
chr1 (192-244)||(46524536-46524588)
chr1 (196-244)||(46525852-46525900)
chr1 (195-245)||(3000222-3000272)
chr1 (195-249)||(46313279-46313333)
[»] chr2 (7 HSPs)
chr2 (195-249)||(10851912-10851966)
chr2 (194-249)||(10853150-10853205)
chr2 (195-244)||(27552451-27552500)
chr2 (196-249)||(28851677-28851730)
chr2 (194-249)||(45412333-45412388)
chr2 (195-249)||(45413482-45413536)
chr2 (196-244)||(27553817-27553865)
[»] chr7 (6 HSPs)
chr7 (195-244)||(9805436-9805485)
chr7 (196-244)||(35080283-35080331)
chr7 (195-244)||(35081611-35081660)
chr7 (195-244)||(23621991-23622040)
chr7 (22-70)||(38847031-38847079)
chr7 (195-249)||(12961983-12962037)
[»] chr4 (12 HSPs)
chr4 (196-249)||(33997901-33997954)
chr4 (195-249)||(8747690-8747744)
chr4 (195-249)||(8749051-8749105)
chr4 (195-249)||(40168638-40168692)
chr4 (195-244)||(8896963-8897012)
chr4 (196-249)||(55986314-55986367)
chr4 (197-249)||(40169784-40169836)
chr4 (185-248)||(53312547-53312610)
chr4 (20-70)||(5119631-5119681)
chr4 (22-68)||(35087715-35087761)
chr4 (199-249)||(55984768-55984818)
chr4 (192-249)||(31435857-31435913)
[»] chr3 (10 HSPs)
chr3 (196-249)||(26722533-26722586)
chr3 (192-248)||(32831096-32831152)
chr3 (196-249)||(10584087-10584140)
chr3 (192-249)||(26723909-26723966)
chr3 (196-249)||(32829740-32829793)
chr3 (194-243)||(51220613-51220662)
chr3 (195-241)||(53157189-53157234)
chr3 (195-244)||(21326319-21326368)
chr3 (206-247)||(25154444-25154485)
chr3 (196-249)||(51219462-51219515)
[»] chr6 (7 HSPs)
chr6 (193-249)||(20410222-20410278)
chr6 (195-249)||(20409066-20409120)
chr6 (193-244)||(16864502-16864553)
chr6 (195-249)||(16859335-16859389)
chr6 (199-249)||(22417661-22417711)
chr6 (192-249)||(12181591-12181648)
chr6 (196-244)||(6978147-6978195)
[»] chr8 (4 HSPs)
chr8 (195-249)||(38612218-38612272)
chr8 (195-249)||(38613422-38613476)
chr8 (192-245)||(13883877-13883930)
chr8 (22-67)||(19991558-19991603)
[»] chr5 (10 HSPs)
chr5 (195-249)||(3597322-3597376)
chr5 (192-249)||(124534-124591)
chr5 (196-249)||(3598927-3598980)
chr5 (196-249)||(5504141-5504194)
chr5 (195-249)||(121348-121402)
chr5 (195-249)||(24242016-24242070)
chr5 (196-244)||(17415699-17415747)
chr5 (185-226)||(14189653-14189694)
chr5 (196-249)||(17414544-17414597)
chr5 (193-249)||(8061853-8061909)


Alignment Details
Target: scaffold0314 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 19877 - 19786
Alignment:
Q  18 ataacctttgtaacctgacttgtaacccaagaaaatagactttctagctctagggtaaaattttg--ttgtgtgcctgaataatggatgcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  19877 ataacctttgtaacctgacttgtaacccaagaaaatagactttctagctctagggtaaagttttgttttgtgtgcctgaataatggatgcat 19786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 19464 - 19384
Alignment:
Q  115 ataaccaaagactttgaaaaagattttgaaaaggagatttgtgattgagtaaagatgtaggaactaagttaataaagaaaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  19464 ataaccaaagactttgaaaaagattttgaaaaggagatttgtgattgagtaaagatgtagtaactatgttaattaagaaaa 19384  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 46312065 - 46312118
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccc 46312118  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 14512720 - 14512669
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgatttt 243  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  14512720 aaaaggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 2999491 - 2999540
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttga 245  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttga 2999540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 46524536 - 46524588
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||| ||||||    
T  46524536 aaaagactaaactacagttttggccccctaagtttaccaatgttgcaattttg 46524588  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 46525900 - 46525852
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttg 46525852  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 3000272 - 3000222
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttga 245  Q
    |||||||||||||||||||||||| ||| |||   ||||||||||||||||    
T  3000272 aggctaaactacagttttgaccccttaattttgttaatgttgcgattttga 3000222  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 46313333 - 46313279
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  ||| | |||||||||| ||||    
T  46313333 aggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccc 46313279  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 10851912 - 10851966
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  10851912 aggctaaactacagttttgaccccctaactttatcaatgttgcgattttaacccc 10851966  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 10853205 - 10853150
Alignment:
Q  194 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  10853205 aaggataaactacagttttgaccccttaactttatcaatgttgcgattttgacccc 10853150  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 27552451 - 27552500
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  27552451 aggctaaactacagttttgaccccctaaatttgccaatgttgcgattttg 27552500  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 28851730 - 28851677
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  28851730 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccc 28851677  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 45412333 - 45412388
Alignment:
Q  194 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  45412333 aaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgacccc 45412388  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 45413536 - 45413482
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||    
T  45413536 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccc 45413482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 27553865 - 27553817
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||||||||||| ||||||||| ||| | |||||||||||||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttg 27553817  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 9805485 - 9805436
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9805485 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 9805436  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 35080283 - 35080331
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 35080331  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 35081660 - 35081611
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  35081660 aggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttg 35081611  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 23622040 - 23621991
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||||||||||||| || ||||| ||| |||||||||||||||||    
T  23622040 aggctaaactacagttttggcctcctaagtttgccaatgttgcgattttg 23621991  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 38847031 - 38847079
Alignment:
Q  22 cctttgtaacctgacttgtaacccaagaaaatagactttctagctctag 70  Q
    |||||| ||||||||||||| |||||||||| ||||||||| |||||||    
T  38847031 cctttgaaacctgacttgtatcccaagaaaacagactttctggctctag 38847079  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 12961983 - 12962037
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| ||||||| |||||||||||||  ||||| |||||||||| ||||    
T  12961983 aggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccc 12962037  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 33997954 - 33997901
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgacccc 33997901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 8747690 - 8747744
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||    
T  8747690 aggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggcccc 8747744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 8749105 - 8749051
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||| |||||||||| ||| ||| ||||||||||||||||| ||||    
T  8749105 aggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggcccc 8749051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 40168638 - 40168692
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||    
T  40168638 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccc 40168692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 8897012 - 8896963
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||||||||||||||| |||||| ||| |||||||| ||||||||    
T  8897012 aggctaaactacagttttgactccctaagtttgccaatgttacgattttg 8896963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 55986367 - 55986314
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||| ||||||| |||||||||||||  ||||| |||||||||||||||    
T  55986367 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttgacccc 55986314  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 40169836 - 40169784
Alignment:
Q  197 gctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||| |||||||||||||||||||||  ||||| |||||||||| ||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccc 40169784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 53312610 - 53312547
Alignment:
Q  185 aataaagaaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgaccc 248  Q
    ||||||||||||||| ||  |||||||| |||||||||||||  | | ||||||||||||||||    
T  53312610 aataaagaaaaggcttaataacagttttcaccccctaactttcacgaagttgcgattttgaccc 53312547  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5119681 - 5119631
Alignment:
Q  20 aacctttgtaacctgacttgtaacccaagaaaatagactttctagctctag 70  Q
    |||||||||| ||||||||||| || ||||||| ||| |||||||||||||    
T  5119681 aacctttgtatcctgacttgtaccctaagaaaacagattttctagctctag 5119631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 35087761 - 35087715
Alignment:
Q  22 cctttgtaacctgacttgtaacccaagaaaatagactttctagctct 68  Q
    ||||||||||| |||||||||||||||||||| | |||| |||||||    
T  35087761 cctttgtaaccagacttgtaacccaagaaaattgtctttttagctct 35087715  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 55984768 - 55984818
Alignment:
Q  199 taaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||| ||||||| |||||||||||||  ||||| |||||||||||||||    
T  55984768 taaactgcagttttaaccccctaactttcacaatggtgcgattttgacccc 55984818  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 31435913 - 31435857
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||||||||||||| |||  ||  ||| ||||||||||||||||||||||    
T  31435913 aaaaggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccc 31435857  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 26722533 - 26722586
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccc 26722586  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 32831152 - 32831096
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgaccc 248  Q
    ||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  32831152 aaaaggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccc 32831096  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 10584140 - 10584087
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggcccc 10584087  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 26723966 - 26723909
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||| |||||| ||||    
T  26723966 aaaaggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccc 26723909  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 32829740 - 32829793
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggcccc 32829793  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 51220662 - 51220613
Alignment:
Q  194 aaggctaaactacagttttgaccccctaactttaccaatgttgcgatttt 243  Q
    ||||||||||||||||||||||||| ||| |||  |||||||||||||||    
T  51220662 aaggctaaactacagttttgaccccttaagtttgtcaatgttgcgatttt 51220613  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 53157234 - 53157189
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgatt 241  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  53157234 aggctaaactacagttttga-cccctaagtttgccaatgttgcgatt 53157189  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 21326319 - 21326368
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||||||| |||||||||| ||| ||||||||| |||| ||||||    
T  21326319 aggctaaactacacttttgaccccttaagtttaccaatattgcaattttg 21326368  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 25154485 - 25154444
Alignment:
Q  206 cagttttgaccccctaactttaccaatgttgcgattttgacc 247  Q
    ||||||| |||||||||||||||||| |||| ||||||||||    
T  25154485 cagttttaaccccctaactttaccaaagttgtgattttgacc 25154444  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 51219462 - 51219515
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||| ||||| |||  ||||||||| |||||| ||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggcccc 51219515  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 20410278 - 20410222
Alignment:
Q  193 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  20410278 aaaggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgacccc 20410222  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 20409066 - 20409120
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||    
T  20409066 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccc 20409120  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 16864553 - 16864502
Alignment:
Q  193 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    |||||||||||| ||||||| |||||||||||||  ||||| ||||||||||    
T  16864553 aaaggctaaactgcagttttaaccccctaacttttacaatggtgcgattttg 16864502  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 16859335 - 16859389
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| || |||| |||||||||||||  ||||| |||||||||||||||    
T  16859335 aggctaaactgcaattttaaccccctaactttcacaatggtgcgattttgacccc 16859389  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 22417661 - 22417711
Alignment:
Q  199 taaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||||||||||||||| ||| | |||||| |||||||| ||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggcccc 22417711  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 12181591 - 12181648
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||| ||||||||||| |||||||||   ||||||| ||||||| ||||    
T  12181591 aaaaggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggcccc 12181648  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 6978195 - 6978147
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||| ||||||| |||||||||||||  ||||| ||||||||||    
T  6978195 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttg 6978147  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 38612218 - 38612272
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||    
T  38612218 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccc 38612272  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 38613476 - 38613422
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||    
T  38613476 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccc 38613422  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 13883930 - 13883877
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttga 245  Q
    ||||||||||||||||||||||||||| ||| |||  |||||||||||||||||    
T  13883930 aaaaggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttga 13883877  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 19991603 - 19991558
Alignment:
Q  22 cctttgtaacctgacttgtaacccaagaaaatagactttctagctc 67  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||    
T  19991603 cctttataacctgacttgtaacccaagaaaacaaactttctagctc 19991558  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 3597322 - 3597376
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  3597322 aggctaaactacagttttggccccctaagtttactaatgttgcgattttggcccc 3597376  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 124591 - 124534
Alignment:
Q  192 aaaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||| ||||    
T  124591 aaaaggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggcccc 124534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 3598980 - 3598927
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccc 3598927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 5504194 - 5504141
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgacccc 5504141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 121348 - 121402
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||||||||||||||| | |||| ||| |||||||||| |||||||||||    
T  121348 aggctaaactacagttttgacactctaaatttgccaatgttgcaattttgacccc 121402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 24242016 - 24242070
Alignment:
Q  195 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||| |||||||||||||||||||||  ||| | |||||||||||||||    
T  24242016 aggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgacccc 24242070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 17415747 - 17415699
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 244  Q
    ||||||||| |||||||||||||||||||||  ||||| ||||||||||    
T  17415747 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttg 17415699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 14189653 - 14189694
Alignment:
Q  185 aataaagaaaaggctaaactacagttttgaccccctaacttt 226  Q
    |||||| ||| ||||||||| |||||||||||||||||||||    
T  14189653 aataaataaatggctaaactgcagttttgaccccctaacttt 14189694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 17414544 - 17414597
Alignment:
Q  196 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    ||||||||| |||||||||||| ||||||||  ||||| |||||||||| ||||    
T  17414544 ggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccc 17414597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 8061853 - 8061909
Alignment:
Q  193 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttgacccc 249  Q
    |||||||||||| ||||||| |||||||||||||   |||| |||||||||| ||||    
T  8061853 aaaggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccc 8061909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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