View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_high_17 (Length: 250)
Name: NF1430_high_17
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13887334 - 13887090
Alignment:
| Q |
1 |
tgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
100 |
Q |
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| T |
13887334 |
tgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
13887235 |
T |
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| Q |
101 |
tgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887234 |
tgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaa |
13887135 |
T |
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| Q |
201 |
actttgttgaatgaaactcgatactcgctgttttcctttgcttct |
245 |
Q |
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| T |
13887134 |
actttgttgaatgaaactcgatactcgctgttttcctttgtttct |
13887090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 13897871 - 13898114
Alignment:
| Q |
2 |
gcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
101 |
Q |
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| T |
13897871 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
13897970 |
T |
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| Q |
102 |
gaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaa |
201 |
Q |
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| T |
13897971 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaa |
13898070 |
T |
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| Q |
202 |
ctttgttgaatgaaactcgatactcgctgttttcctttgcttct |
245 |
Q |
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| T |
13898071 |
atttgtcgaatgaaactcgatactcgctattttcctttgtttct |
13898114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1034927 - 1035171
Alignment:
| Q |
1 |
tgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
100 |
Q |
| |
|
|||||| || |||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1034927 |
tgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatct |
1035026 |
T |
|
| Q |
101 |
tgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaa |
200 |
Q |
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|||||||| |||| ||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||| || |||| |
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| T |
1035027 |
tgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaa |
1035126 |
T |
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| Q |
201 |
actttgttgaatgaaactcgatactcgctgttttcctttgcttct |
245 |
Q |
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| T |
1035127 |
aatttgtcgaatgaaactcgatactagctattttcctttgtttct |
1035171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 28667237 - 28667446
Alignment:
| Q |
31 |
caaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaac |
130 |
Q |
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||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| || | ||| ||||||||||| | || | | ||| ||||| |
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| T |
28667237 |
caaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgt-gacagcccttttatcaac |
28667335 |
T |
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| Q |
131 |
-gatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgct |
229 |
Q |
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||| |||||| ||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| |||||| |
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| T |
28667336 |
tgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgct |
28667435 |
T |
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| Q |
230 |
gttttcctttg |
240 |
Q |
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||||| ||||| |
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| T |
28667436 |
gtttttctttg |
28667446 |
T |
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