View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_high_20 (Length: 241)
Name: NF1430_high_20
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 9680278 - 9680063
Alignment:
| Q |
18 |
aaatggaatttgaccataaaatctattagaagaaagtttcaatatctctaaattgttcaattcaccaatccaatgtggaatgctcccattgaaataattc |
117 |
Q |
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| T |
9680278 |
aaatggaatttgaccataaaatctattagaagaaagtttcaatatctctaaattgttcaattcaccaatccaatgtggaatgctcccattgaaataattc |
9680179 |
T |
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| Q |
118 |
ccttgcaaacttagtaatgtgcatgaggcgagtctttgtatcgactctggaattatatcagtaagaagattatcactgaaatcaatcaacttcaaaagca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9680178 |
ccttgcaaacttagtaatgtgcatgaggcgagtctttgtatcgactctggaattacatcagtaagaagattatcactgaaatcaatcaacttcaaaagca |
9680079 |
T |
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| Q |
218 |
aacagtttcctatgct |
233 |
Q |
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|||||||||||||||| |
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| T |
9680078 |
aacagtttcctatgct |
9680063 |
T |
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