View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_high_23 (Length: 233)

Name: NF1430_high_23
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_high_23
NF1430_high_23
[»] chr7 (2 HSPs)
chr7 (1-226)||(40749260-40749485)
chr7 (3-139)||(44150833-44150969)
[»] chr4 (2 HSPs)
chr4 (30-127)||(22085566-22085663)
chr4 (3-108)||(30518181-30518286)
[»] chr1 (8 HSPs)
chr1 (1-127)||(31644089-31644215)
chr1 (10-139)||(12774894-12775023)
chr1 (3-139)||(28496139-28496275)
chr1 (9-139)||(12804550-12804680)
chr1 (30-108)||(36989328-36989406)
chr1 (1-103)||(50788850-50788952)
chr1 (1-94)||(42287119-42287212)
chr1 (30-94)||(4160379-4160443)
[»] chr8 (2 HSPs)
chr8 (1-127)||(5788754-5788880)
chr8 (1-108)||(33186723-33186830)
[»] chr2 (3 HSPs)
chr2 (30-112)||(40040773-40040855)
chr2 (3-94)||(42898300-42898391)
chr2 (3-124)||(38895890-38896011)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40749485 - 40749260
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749485 tatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 40749386  T
Q  101 ttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749385 ttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttc 40749286  T
Q  201 cttggttctttgttggacctttgctt 226  Q
    ||||||||||||||||| ||||||||    
T  40749285 cttggttctttgttggatctttgctt 40749260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 44150833 - 44150969
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||| ||||||||||| |||||   |||||| |||||||| |||||||| |||||| | || || ||||| ||||| |||||||||||||| |||||||    
T  44150833 tattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatttcttctcaccatgtt 44150932  T
Q  103 ttctactaaaatgtttctttattccggtgaggtcacc 139  Q
    | |  ||||||||||| || ||||| || ||||||||    
T  44150933 tgcggctaaaatgttttttgattccagtaaggtcacc 44150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 22085566 - 22085663
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattcc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  22085566 tgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcc 22085663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 30518181 - 30518286
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||||||||||||||| ||||| | ||||||||||||||| || ||||| |||||    || || ||||| ||||||||||| ||||| || ||||| |    
T  30518181 tattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccacttcttttcaccatgct 30518280  T
Q  103 ttctac 108  Q
    ||||||    
T  30518281 ttctac 30518286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 31644089 - 31644215
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||  |||| || ||||||||||| |||||||| ||||| |||||    
T  31644089 tatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccattttttctcaccatg 31644188  T
Q  101 ttttctactaaaatgtttctttattcc 127  Q
    |||||||||| |||||||||| |||||    
T  31644189 ttttctactataatgtttcttaattcc 31644215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 12775023 - 12774894
Alignment:
Q  10 tagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctact 109  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||      
T  12775023 tagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttctaaa 12774924  T
Q  110 aaaatgtttctttattccggtgaggtcacc 139  Q
    | | |||||||| ||||| |||||||||||    
T  12774923 atagtgtttcttaattccagtgaggtcacc 12774894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 28496139 - 28496275
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||| |||||||| || || |    
T  28496139 tattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcaccgtgct 28496238  T
Q  103 ttctactaaaatgtttctttattccggtgaggtcacc 139  Q
    |||||||||| || || ||||| || |||||||||||    
T  28496239 ttctactaaagtgcttttttatacctgtgaggtcacc 28496275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 12804550 - 12804680
Alignment:
Q  9 ctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctac 108  Q
    ||||||||||| || ||||  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||||||     
T  12804550 ctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacatttccactttttctcaccatgctttctag 12804649  T
Q  109 taaaatgtttctttattccggtgaggtcacc 139  Q
     ||| || ||||| ||||| |||||||||||    
T  12804650 aaaagtgcttcttaattccagtgaggtcacc 12804680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 36989406 - 36989328
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctac 108  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || ||||| ||||| |||||||    
T  36989406 tgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccactttttctcaccatgctttctac 36989328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50788850 - 50788952
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    |||||||||| || ||||| || ||||  || || ||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||    
T  50788850 tatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagcacttatcacacttccatttcttctcaccatg 50788949  T
Q  101 ttt 103  Q
    |||    
T  50788950 ttt 50788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42287212 - 42287119
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 94  Q
    ||||||||||||||||||| || ||||  || |||||||| ||||||||||| ||||||||||| || || || ||||| ||||| ||||||||    
T  42287212 tatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccacttcttctc 42287119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 4160443 - 4160379
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 94  Q
    |||||||||||||| || ||||||||||||   || ||||| || ||||||||||| ||||||||    
T  4160443 tgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccacttcttctc 4160379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5788754 - 5788880
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||||||| ||||| ||||| |  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| |||||    
T  5788754 tatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacacttttcacatttccacttcttctcaccatg 5788853  T
Q  101 ttttctactaaaatgtttctttattcc 127  Q
     |||||   ||| |||||||| |||||    
T  5788854 ctttctggaaaagtgtttcttgattcc 5788880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33186830 - 33186723
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    |||| ||||||| ||||||   ||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| || ||||| |||||    
T  33186830 tatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcaccatg 33186731  T
Q  101 ttttctac 108  Q
    ||||||||    
T  33186730 ttttctac 33186723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 40040855 - 40040773
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctactaaa 112  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||    
T  40040855 tgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaa 40040773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 42898391 - 42898300
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 94  Q
    |||||||| || ||||||||||| | |||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||    
T  42898391 tattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctc 42898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 38895890 - 38896011
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||||||||||||||| || || | ||| ||||||||||| |||||||| |||||    || || ||||| ||||||||||| |||||||| || ||||    
T  38895890 tattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttccacttcttctcaccgtgtt 38895989  T
Q  103 ttctactaaaatgtttctttat 124  Q
    | |||| ||| || ||||||||    
T  38895990 tcctacaaaagtgcttctttat 38896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University