View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_10 (Length: 412)

Name: NF1430_low_10
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_10
NF1430_low_10
[»] chr3 (27 HSPs)
chr3 (214-405)||(20365090-20365281)
chr3 (1-179)||(20365376-20365554)
chr3 (64-178)||(22809138-22809249)
chr3 (167-208)||(20365333-20365374)
chr3 (64-128)||(10521184-10521248)
chr3 (64-128)||(10667428-10667492)
chr3 (64-128)||(52421133-52421197)
chr3 (66-179)||(43079878-43079988)
chr3 (64-176)||(42956126-42956235)
chr3 (90-178)||(53787697-53787782)
chr3 (64-123)||(10448804-10448863)
chr3 (64-135)||(29270391-29270462)
chr3 (64-179)||(40240521-40240633)
chr3 (64-128)||(52021276-52021341)
chr3 (64-100)||(5129835-5129871)
chr3 (64-100)||(29002742-29002778)
chr3 (64-128)||(53218032-53218096)
chr3 (90-179)||(17752075-17752161)
chr3 (90-179)||(19053395-19053481)
chr3 (64-176)||(40581023-40581133)
chr3 (64-176)||(34707660-34707769)
chr3 (124-174)||(48116719-48116769)
chr3 (64-117)||(7292710-7292763)
chr3 (64-128)||(36182533-36182598)
chr3 (90-180)||(7124638-7124725)
chr3 (64-116)||(23816175-23816227)
chr3 (72-128)||(28741206-28741262)
[»] chr8 (16 HSPs)
chr8 (64-179)||(24350463-24350575)
chr8 (64-178)||(35168383-35168497)
chr8 (68-179)||(10298871-10298978)
chr8 (64-179)||(32975717-32975829)
chr8 (64-179)||(28879088-28879197)
chr8 (64-176)||(14724912-14725021)
chr8 (64-175)||(34286512-34286619)
chr8 (64-178)||(28280739-28280850)
chr8 (64-181)||(38895689-38895803)
chr8 (75-179)||(25465791-25465891)
chr8 (64-100)||(1089043-1089079)
chr8 (64-135)||(8216888-8216960)
chr8 (49-178)||(9130962-9131088)
chr8 (64-135)||(19327897-19327967)
chr8 (66-124)||(35285960-35286018)
chr8 (90-176)||(14262382-14262465)
[»] chr7 (19 HSPs)
chr7 (64-173)||(14691249-14691355)
chr7 (64-179)||(29378675-29378787)
chr7 (64-179)||(44613417-44613529)
chr7 (72-176)||(47654361-47654462)
chr7 (64-179)||(39279459-39279572)
chr7 (64-135)||(14536912-14536983)
chr7 (64-127)||(43391751-43391814)
chr7 (64-178)||(22032792-22032903)
chr7 (64-128)||(23356483-23356547)
chr7 (64-116)||(30181580-30181632)
chr7 (64-123)||(20888604-20888663)
chr7 (64-127)||(23119913-23119976)
chr7 (64-134)||(22575616-22575686)
chr7 (66-123)||(7774744-7774800)
chr7 (64-175)||(29390499-29390606)
chr7 (64-179)||(38372588-38372700)
chr7 (72-128)||(16012736-16012792)
chr7 (68-128)||(32917584-32917644)
chr7 (64-100)||(48021667-48021703)
[»] chr4 (34 HSPs)
chr4 (64-179)||(17222859-17222971)
chr4 (64-179)||(29877669-29877781)
chr4 (64-179)||(48591368-48591480)
chr4 (64-179)||(36740934-36741046)
chr4 (64-175)||(43415236-43415345)
chr4 (64-130)||(43740066-43740131)
chr4 (64-176)||(46704217-46704326)
chr4 (67-128)||(35124420-35124481)
chr4 (64-179)||(36254980-36255092)
chr4 (64-179)||(18424222-18424333)
chr4 (64-123)||(21216325-21216384)
chr4 (90-175)||(22273836-22273918)
chr4 (64-179)||(23297468-23297577)
chr4 (67-179)||(38345766-38345874)
chr4 (64-179)||(7148802-7148914)
chr4 (63-128)||(8601230-8601295)
chr4 (64-179)||(18630839-18630951)
chr4 (67-128)||(28663606-28663667)
chr4 (64-179)||(12495588-12495702)
chr4 (64-128)||(28074395-28074458)
chr4 (64-123)||(19725323-19725382)
chr4 (64-123)||(23335672-23335731)
chr4 (136-179)||(43699393-43699436)
chr4 (64-135)||(52700529-52700600)
chr4 (64-118)||(212950-213004)
chr4 (90-178)||(2547992-2548077)
chr4 (83-128)||(15184595-15184640)
chr4 (64-121)||(27368151-27368208)
chr4 (66-123)||(32628810-32628867)
chr4 (64-100)||(897000-897036)
chr4 (64-116)||(2494404-2494456)
chr4 (90-179)||(35405740-35405825)
chr4 (66-123)||(43699478-43699537)
chr4 (135-179)||(48667768-48667812)
[»] chr1 (31 HSPs)
chr1 (64-179)||(48819329-48819441)
chr1 (64-179)||(6337700-6337812)
chr1 (67-179)||(37712100-37712209)
chr1 (64-179)||(41196654-41196766)
chr1 (64-179)||(4068145-4068257)
chr1 (64-179)||(9572728-9572840)
chr1 (64-123)||(3069851-3069910)
chr1 (66-175)||(26988180-26988286)
chr1 (64-176)||(37329359-37329468)
chr1 (64-179)||(15515291-15515403)
chr1 (64-179)||(28690034-28690146)
chr1 (64-178)||(22593352-22593463)
chr1 (64-179)||(47413402-47413514)
chr1 (96-179)||(42367013-42367092)
chr1 (64-179)||(13038977-13039089)
chr1 (64-112)||(23544821-23544869)
chr1 (63-123)||(39658320-39658380)
chr1 (64-132)||(50919517-50919585)
chr1 (64-123)||(16888963-16889021)
chr1 (72-178)||(23369332-23369438)
chr1 (69-123)||(35590165-35590219)
chr1 (64-175)||(26435123-26435231)
chr1 (66-123)||(26946101-26946158)
chr1 (64-100)||(10365201-10365237)
chr1 (64-178)||(12256637-12256747)
chr1 (64-128)||(31378743-31378807)
chr1 (64-100)||(39941471-39941507)
chr1 (64-100)||(39941540-39941576)
chr1 (64-116)||(39941612-39941664)
chr1 (64-135)||(45267495-45267567)
chr1 (64-128)||(49971281-49971345)
[»] chr5 (31 HSPs)
chr5 (64-179)||(38461224-38461338)
chr5 (64-178)||(41419531-41419642)
chr5 (64-176)||(28625510-28625619)
chr5 (64-180)||(17657272-17657385)
chr5 (64-180)||(28357171-28357284)
chr5 (72-179)||(39154705-39154809)
chr5 (65-179)||(40452421-40452533)
chr5 (64-180)||(13060545-13060658)
chr5 (64-179)||(24030245-24030356)
chr5 (64-124)||(1473386-1473446)
chr5 (65-178)||(3977506-3977614)
chr5 (64-128)||(12987006-12987070)
chr5 (64-128)||(43319033-43319097)
chr5 (64-123)||(31637091-31637150)
chr5 (64-123)||(41534653-41534712)
chr5 (69-181)||(1576665-1576774)
chr5 (69-181)||(1608041-1608150)
chr5 (64-179)||(5559863-5559978)
chr5 (66-179)||(27805947-27806057)
chr5 (64-171)||(11912054-11912158)
chr5 (64-128)||(12467294-12467359)
chr5 (64-186)||(28357382-28357502)
chr5 (64-179)||(29922133-29922245)
chr5 (64-175)||(41059737-41059845)
chr5 (64-128)||(1868876-1868940)
chr5 (64-128)||(6144768-6144832)
chr5 (64-178)||(7364254-7364365)
chr5 (70-179)||(35536881-35536986)
chr5 (68-179)||(2577372-2577481)
chr5 (63-128)||(2878669-2878733)
chr5 (64-126)||(7110981-7111039)
[»] chr2 (23 HSPs)
chr2 (70-179)||(4026961-4027067)
chr2 (64-179)||(5903563-5903680)
chr2 (64-179)||(36501459-36501571)
chr2 (66-179)||(33321256-33321366)
chr2 (64-179)||(735994-736106)
chr2 (64-176)||(29133614-29133723)
chr2 (69-178)||(23956209-23956315)
chr2 (64-179)||(38216049-38216161)
chr2 (64-178)||(887442-887553)
chr2 (64-178)||(4090519-4090630)
chr2 (64-116)||(12223882-12223934)
chr2 (64-116)||(12442843-12442895)
chr2 (64-178)||(42064881-42064992)
chr2 (105-176)||(26440161-26440232)
chr2 (64-179)||(8832487-8832599)
chr2 (64-124)||(12267027-12267087)
chr2 (64-128)||(12683598-12683662)
chr2 (64-176)||(21788487-21788596)
chr2 (64-114)||(25836718-25836768)
chr2 (65-123)||(39592280-39592338)
chr2 (65-122)||(2790068-2790125)
chr2 (49-78)||(13098029-13098058)
chr2 (135-175)||(7480847-7480887)
[»] chr6 (20 HSPs)
chr6 (65-175)||(7576809-7576916)
chr6 (67-123)||(13429488-13429544)
chr6 (64-128)||(18078238-18078302)
chr6 (65-175)||(21609997-21610104)
chr6 (65-179)||(2027120-2027231)
chr6 (64-128)||(16589781-16589845)
chr6 (64-128)||(16605535-16605599)
chr6 (68-176)||(2255768-2255873)
chr6 (64-179)||(21891282-21891394)
chr6 (72-128)||(15054577-15054633)
chr6 (72-179)||(3210933-3211049)
chr6 (65-128)||(8014819-8014882)
chr6 (64-175)||(10755231-10755336)
chr6 (83-179)||(32165205-32165298)
chr6 (90-135)||(3829904-3829949)
chr6 (67-123)||(25430762-25430819)
chr6 (64-121)||(34509942-34509999)
chr6 (64-128)||(16989753-16989817)
chr6 (64-116)||(24625881-24625933)
chr6 (135-179)||(35071372-35071416)
[»] scaffold0157 (1 HSPs)
scaffold0157 (64-179)||(24775-24889)
[»] scaffold0048 (1 HSPs)
scaffold0048 (64-122)||(58866-58924)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 214 - 405
Target Start/End: Complemental strand, 20365281 - 20365090
Alignment:
Q  214 gaacatttagttgataattgaaatagtagacgagcttaaaaattaaatttttattggtaggacccatatttttgaatttttgaaaaggtgggtcttactt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365281 gaacatttagttgataattgaaatagtagacgagcttaaaaattaaatttttattggtaggacccatatttttgaatttttgaaaaggtgggtcttactt 20365182  T
Q  314 atatcagacttatgtgtatctctctgatcaatagtgttctccatttcttttgggaaatgaagaggatctcaacttctttttgatgatgatgt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365181 atatcagacttatgtgtatctctctgatcaatagtgttctccatttcttttgggaaatgaagaggatctcaacttctttttgatgatgatgt 20365090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 20365554 - 20365376
Alignment:
Q  1 ttaaggagagtggtaatttagaagttaacttgataaattgagagttcttttatttgcataagctattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365554 ttaaggagagtggtaatttagaagctaacttgataaattgagagttcttttatttgcataagctattattcataagcttgtcaaagtactttatgaaaaa 20365455  T
Q  101 gcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365454 gcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 20365376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 22809249 - 22809138
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| | | ||||||||||| |||||| ||   ||||||||||||||||||| ||| ||||| ||||    
T  22809249 tattattcataagcttgtcaaggtagtttatgaaaaaactgcttatgaagatacaattttcgt---taagaagaacttatgaattaacataaaaacttat 22809153  T
Q  164 ttatttgcataagct 178  Q
    ||||||||| |||||    
T  22809152 ttatttgcacaagct 22809138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 20365374 - 20365333
Alignment:
Q  167 tttgcataagctaatccaaatggaccctttattgcaatatcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20365374 tttgcataagctaatccaaatggaccctttattgcaatatcc 20365333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 10521184 - 10521248
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| ||||||||| | || ||||||||||||||| ||||||||    
T  10521184 tattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgtta 10521248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 10667428 - 10667492
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| ||||||||| | || ||||||||||||||| ||||||||    
T  10667428 tattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgtta 10667492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 52421197 - 52421133
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| |||||||||||  |||| ||||||||| |||||||||||    
T  52421197 tattattcataagcttgtcaaggtagtttatgaaaaaatagttaatgaagatacaatttttgtta 52421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 43079988 - 43079878
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattt 165  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||| || | |    |||||||||||||| ||  ||||  ||||||    
T  43079988 ttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgtgatt---gagaacttatgaattaacttaaaagcttattt 43079892  T
Q  166 atttgcataagcta 179  Q
    ||||| ||||||||    
T  43079891 atttgaataagcta 43079878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 42956235 - 42956126
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||| |||||| ||||| ||||||| ||| ||| |||| |||||| |||||| |||| |    ||||||||| |||| ||| ||||| ||||    
T  42956235 tattattcataaacttgtcgaagtagtttatgataaaacagcttataaagatacaattttcgttagt---gagaacttataaattaacataaaaacttat 42956139  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  42956138 ttatttgcataag 42956126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 53787782 - 53787697
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagct 178  Q
    |||| |||||| |||||||| |||||||||||||||||| |    |||||||||||||| | | ||||| |||||||||||||||||||    
T  53787782 tttacgaaaaaacagtttataaagatataatttttgttatt---gagaacttatgaattaagataaaaacttatttatttgcataagct 53787697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 10448804 - 10448863
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||| |||||||||| || ||| ||||||||||| |||||||||||| |||||||||    
T  10448804 tattatttataagcttgttaatgtagtttatgaaaaaacagtttatgaaggtataatttt 10448863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 29270391 - 29270462
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    |||||||||||||||| ||||  || ||||||||||| ||| ||||||||||| |||||| |||||| ||||    
T  29270391 tattattcataagcttttcaagataatttatgaaaaaacagcttatgaagatacaattttcgttaatgagaa 29270462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 40240633 - 40240521
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||| |||| | ||| ||||||||||| ||  ||||||||||| |||||| |||| |    ||| |||||||||| | | ||||  ||||    
T  40240633 tattattcataagcgtgtctaggtagtttatgaaaaaacaacttatgaagatacaattttcgttagt---gagagcttatgaattaagataaaagcttat 40240537  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  40240536 ttatttgcataagcta 40240521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 52021276 - 52021341
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatg-aaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||| ||||||| ||| |||||| ||||| ||| |||||||||||||||||| ||||    
T  52021276 tattattcataagattgtcaaggtagtttatgaaaaaaacagcttatgaagatataattttcgtta 52021341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 5129871 - 5129835
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5129871 tattattcataagcttgtcaatgtactttatgaaaaa 5129835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 29002742 - 29002778
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29002742 tattattcataagcttgtcaaagtaatttatgaaaaa 29002778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 53218096 - 53218032
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| ||||||||||| ||  || |||||||| |||||| ||||    
T  53218096 tattattcataagcttgtcaaggtagtttatgaaaaaacaacttttgaagatacaattttcgtta 53218032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 17752161 - 17752075
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    ||||||||| | ||||||||||||||| |||||| |||| |   |||||||||| |||| ||| ||||  |||||||||| |||||||||    
T  17752161 tttatgaaagatcagtttatgaagatacaattttcgttagt---aagaacttataaattaacataaaagtttatttatttacataagcta 17752075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 19053481 - 19053395
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    ||||||||| | ||||||||||||||| |||||| |||| |   |||||||||| |||| ||| ||||  |||||||||| |||||||||    
T  19053481 tttatgaaagatcagtttatgaagatacaattttcgttagt---aagaacttataaattaacataaaagtttatttatttacataagcta 19053395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 40581133 - 40581023
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatga-aaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagtta 162  Q
    ||||||| ||||||||||||| ||| ||||||| |||| |||  |||||||| | |||||| |||| |    |||||||||||||| ||| ||||  |||    
T  40581133 tattattaataagcttgtcaaggtagtttatgaaaaaaacagcgtatgaagaaacaattttcgttagt---gagaacttatgaattaacataaaatctta 40581037  T
Q  163 tttatttgcataag 176  Q
    ||||||||||||||    
T  40581036 tttatttgcataag 40581023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 34707769 - 34707660
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| ||||||||||| ||| | | ||||||| |||||| ||   ||   |||||||| ||||| ||| ||||| ||||    
T  34707769 tattattcataagcttgttaaggtagtttatgaaaaaacagctaacgaagatacaattttcgt---tagcgagaacttacgaattaacataaaaacttat 34707673  T
Q  164 ttatttgcataag 176  Q
    |||||||| ||||    
T  34707672 ttatttgcttaag 34707660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 48116769 - 48116719
Alignment:
Q  124 tgttaataagaagaacttatgaattgacacaaaaagttatttatttgcata 174  Q
    |||||||||||||||||||| |||| | | |||| ||||||||||||||||    
T  48116769 tgttaataagaagaacttataaattaagataaaatgttatttatttgcata 48116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 7292710 - 7292763
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatat 117  Q
    ||||||||||||| |||||||  || ||||||||||| |||||||||| |||||    
T  7292710 tattattcataagtttgtcaatatagtttatgaaaaaacagtttatgatgatat 7292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 36182533 - 36182598
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagc-agtttatgaagatataatttttgtta 128  Q
    |||||||||||||||| || ||||| | ||||||||| | || ||||||| |||||||||||||||    
T  36182533 tattattcataagcttttcgaagtagtatatgaaaaaactagcttatgaatatataatttttgtta 36182598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 7124725 - 7124638
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagctaa 180  Q
    ||||||||||| ||  | ||||||||| ||||||||||||||   ||||||||| |||| |||  |||| ||||||||||| |||| ||||    
T  7124725 tttatgaaaaaacacatgatgaagatacaatttttgttaata---agaacttatcaattaacatcaaaacttatttatttgtataaactaa 7124638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 23816227 - 23816175
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    |||||||||||||||  |||| ||| ||||||||||| ||| |||||||||||    
T  23816227 tattattcataagctattcaaggtagtttatgaaaaaacagcttatgaagata 23816175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 28741262 - 28741206
Alignment:
Q  72 ataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||| |||||| ||||||||||| ||| |||||||| || |||||| ||||    
T  28741262 ataagcttgttaaagtagtttatgaaaaaacagattatgaaggtacaattttcgtta 28741206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 24350575 - 24350463
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| |||||||||||  || |||||||||||||||||| |||| |   ||||||||||||||| ||| ||||  ||||    
T  24350575 tattattcataagcttgtcaacgtaatttatgaaaaaatagcttatgaagatataattttcgttagt---aagaacttatgaattaacataaaatcttat 24350479  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  24350478 ttatttgcataagcta 24350463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 35168497 - 35168383
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||| || | | ||||||||||||||||| ||  ||||  | ||    
T  35168497 tattattcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagatacaattttcgtcagttagaagaacttatgaattaacttaaaagctgat 35168398  T
Q  164 ttatttgcataagct 178  Q
    |||||| ||||||||    
T  35168397 ttatttacataagct 35168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 10298978 - 10298871
Alignment:
Q  68 attcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttat 167  Q
    ||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||||||||||    |||||||||||||| |||  ||||| ||| |||    
T  10298978 attcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttaat---gagaacttatgaattaaca-taaaagctatctat 10298883  T
Q  168 ttgcataagcta 179  Q
    ||||||||||||    
T  10298882 ttgcataagcta 10298871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 32975717 - 32975829
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||  ||  ||||||||||| ||||||||||  |    |||||||||||||| | | ||||  ||||    
T  32975717 tattattcataagcttgtcaaggtagtttatgaaaacacaacttatgaagatacaatttttgtttgt---gagaacttatgaattaatataaaagcttat 32975813  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  32975814 ttatttgcataagcta 32975829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 28879088 - 28879197
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||| | ||  ||||||||||     |||||||| | | ||||||||||||||| ||| ||||  ||||    
T  28879088 tattattcataagcttgtcaaggtagtttatgaaataacaacttatgaagat-----ttttgttagtga-aagaacttatgaattaacataaaagcttat 28879181  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  28879182 ttatttgcataagcta 28879197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 14725021 - 14724912
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||| |||| || ||| ||||||||||| ||  ||||| || ||||||||| |||||||   |||||||||||||| | | ||||| ||||    
T  14725021 tattatttataagattgttaatgtaatttatgaaaaaacaacttatgtaggtataattttcgttaata---agaacttatgaattaagataaaaacttat 14724925  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  14724924 ttatttgcataag 14724912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 34286619 - 34286512
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||| |||||| ||||    | |||||||||||||| | | ||||  ||||    
T  34286619 tattattcataagcttgtcaaggtagtttgtgaaaaa-cagcttatgaagatacaattttcgttag---ggagaacttatgaattaatataaaagcttat 34286524  T
Q  164 ttatttgcataa 175  Q
    ||||||||||||    
T  34286523 ttatttgcataa 34286512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 28280739 - 28280850
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||| |||| || ||| ||||||||||| | |||||||||| ||||  |||||||| |    |||||||||||||| | | ||||| ||||    
T  28280739 tattatttataagtttgttaatgtagtttatgaaaaaactgtttatgaaggtataccttttgttagt---gagaacttatgaattaagataaaaacttat 28280835  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  28280836 ttatttgcataagct 28280850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 38895689 - 38895803
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| |||||||||||  | |||||||||||| ||| ||||||| |  ||| ||||||| |||| | | ||||| ||||    
T  38895689 tattattcataagcttgttaaggtagtttatgaaaaaataatttatgaagatacaatatttgttagt--gaa-aacttataaattaatataaaaacttat 38895785  T
Q  164 ttatttgcataagctaat 181  Q
    ||||||| |||| |||||    
T  38895786 ttatttgtataaactaat 38895803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 25465891 - 25465791
Alignment:
Q  75 agcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcata 174  Q
    |||||||||| | | ||||||||||| ||  ||||||||||| ||||||||||| |  ||| |||||||||||| ||| ||||  |||||||||||||||    
T  25465891 agcttgtcaaggaagtttatgaaaaa-caacttatgaagatacaatttttgttact--gaa-aacttatgaattaacataaaagcttatttatttgcata 25465796  T
Q  175 agcta 179  Q
    |||||    
T  25465795 agcta 25465791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1089043 - 1089079
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1089043 tattattcataagcttgtcaatgtactttatgaaaaa 1089079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 8216960 - 8216888
Alignment:
Q  64 tattattcataagcttgtcaaag-tactttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    |||||||||||| |||||| ||| || |||||||||||| || ||||||||||| |||||| |||| ||||||    
T  8216960 tattattcataatcttgtctaaggtagtttatgaaaaagtaggttatgaagatacaattttcgttagtaagaa 8216888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 9131088 - 9130962
Alignment:
Q  49 tttatttgcataagctattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaatt 148  Q
    ||||||||||||||||||| |||||||||||||| |  |  ||| |||| || ||   |||||||||| |||||| |||| |     |||||||||||||    
T  9131088 tttatttgcataagctatttttcataagcttgtcgatttggtttctgaagaaacaacctatgaagatacaattttcgttagt---cggaacttatgaatt 9130992  T
Q  149 gacacaaaaagttatttatttgcataagct 178  Q
     ||| ||||  |||||||||||||||||||    
T  9130991 aacataaaagtttatttatttgcataagct 9130962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 19327897 - 19327967
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    ||||||||||||| |||| || ||| |||||| |||| |||||||| |||||| ||||||||||||| ||||    
T  19327897 tattattcataagtttgt-aatgtagtttatggaaaaacagtttataaagatacaatttttgttaatgagaa 19327967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 35285960 - 35286018
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattttt 124  Q
    ||||||||||||| ||||||||| |||||||||||   | ||||||||||| |||||||    
T  35285960 ttattcataagctcgtcaaagtagtttatgaaaaaaatgcttatgaagatacaattttt 35286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 14262382 - 14262465
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataag 176  Q
    ||||||||||| ||  ||||||| ||| ||||||||||| |   |||| |||||||||| ||| ||||| |||||| ||||||||||    
T  14262382 tttatgaaaaaacaacttatgaatatacaatttttgttagt---aagatcttatgaattaacataaaaacttatttttttgcataag 14262465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 14691355 - 14691249
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||| |||| |    |||||||||||||| ||| |||| |||||    
T  14691355 tattattcataagcttgtcaatgtaatttatgaaaaaacaatttatgaagatataattttcgttagt---gagaacttatgaattaacataaaaggttat 14691259  T
Q  164 ttatttgcat 173  Q
    ||||||||||    
T  14691258 ttatttgcat 14691249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 29378675 - 29378787
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| || || ||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||| |   ||||||||||||||| ||  ||||  ||||    
T  29378675 tattatttatgagtttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagt---aagaacttatgaattaacgtaaaagcttat 29378771  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  29378772 ttatttgcataagcta 29378787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 44613529 - 44613417
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| ||||||||||| ||  |||||| |||| ||||||| |||||    |||||||||||||| | | ||||  ||||    
T  44613529 tattattcataagcttgttaaggtagtttatgaaaaaacaacttatgacgatacaatttttattaat---tagaacttatgaattaatataaaagcttat 44613433  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  44613432 ttatttgcataagcta 44613417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 47654462 - 47654361
Alignment:
Q  72 ataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgc 171  Q
    |||||||||| || ||| ||||||||||| |||||||||||| || |||||| |||| |    |||||||||||||| | | ||||| ||||||||||||    
T  47654462 ataagcttgttaatgtagtttatgaaaaaacagtttatgaaggtacaattttcgttagt---gagaacttatgaattaagataaaaacttatttatttgc 47654366  T
Q  172 ataag 176  Q
    |||||    
T  47654365 ataag 47654361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 39279459 - 39279572
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||  ||||||||||| ||| ||| ||||||| |||||| ||||||    ||||| |||||||| ||| ||||  ||||    
T  39279459 tattattcataagcttgttaaggtggtttatgaaaaatcagcttaggaagatacaattttcgttaat--tgagaacctatgaattaacataaaagcttat 39279556  T
Q  164 ttatttgcataagcta 179  Q
    ||||||| ||||||||    
T  39279557 ttatttgtataagcta 39279572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 14536912 - 14536983
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    ||||||||||||| |||||||  || ||||||||||| || |||||||||||||| ||||||| || |||||    
T  14536912 tattattcataagattgtcaagatagtttatgaaaaaacactttatgaagatatattttttgtcaaaaagaa 14536983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 43391751 - 43391814
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtt 127  Q
    ||||||||||||| |||| || ||| |||||||||||  | |||||||||||||||||||||||    
T  43391751 tattattcataagtttgttaaggtagtttatgaaaaaataatttatgaagatataatttttgtt 43391814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 22032792 - 22032903
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| |||||| ||| || ||| ||||||||||| || ||||||||| || |||||| |||| |    ||||||||| |||| | | ||||| ||||    
T  22032792 tattatttataagcatgttaatgtagtttatgaaaaaacaatttatgaaggtacaattttcgttagt---gagaacttataaattaagataaaaacttat 22032888  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  22032889 ttatttgcataagct 22032903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 23356547 - 23356483
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||| ||| ||||||| ||| ||||||||||| ||||||||||| |||  ||||||||||    
T  23356547 tattattcacaagtttgtcaaggtaatttatgaaaaaacagtttatgaaaatactatttttgtta 23356483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 30181580 - 30181632
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    ||||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||    
T  30181580 tattattcataagcttgtcaaggtagtttatcaaaaaacagcttatgaagata 30181632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 20888604 - 20888663
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||  || ||| ||||||||||| || |||||||||||| ||||||    
T  20888604 tattattcataagcttgcaaaggtagtttatgaaaaaacaatttatgaagatacaatttt 20888663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 23119976 - 23119913
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtt 127  Q
    ||||||||||||| ||||||| ||| |||| |||| | |||||| |||||||| ||||||||||    
T  23119976 tattattcataagtttgtcaatgtagtttaagaaataacagtttgtgaagatacaatttttgtt 23119913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 22575616 - 22575686
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataaga 134  Q
    ||||||| ||||| |||| ||  || ||||||||||| ||||||||||||||| |||||| |||| |||||    
T  22575616 tattatttataagtttgttaagatattttatgaaaaaacagtttatgaagatacaattttcgttagtaaga 22575686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 7774800 - 7774744
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||| ||||| ||||||| ||||||||||||||| || |||||||||||| ||||||    
T  7774800 ttatttataagtttgtcaacgtactttatgaaaaaaca-tttatgaagatacaatttt 7774744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 29390606 - 29390499
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| ||||||||||| ||  ||||||||||| |||||| ||   ||   |||| ||||||||| ||| ||||  ||||    
T  29390606 tattattcataagcttgtaaaggtagtttatgaaaaa-caacttatgaagatacaattttcgt---tagctagaatttatgaattaacataaaagcttat 29390511  T
Q  164 ttatttgcataa 175  Q
    ||||||||||||    
T  29390510 ttatttgcataa 29390499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 38372588 - 38372700
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| ||||||| ||| |||| |||||||||| | | ||||| | |||||| |||| |    |||||||||||||| ||| ||||  | ||    
T  38372588 tattattcataagtttgtcaaggtagtttacgaaaaagcagctcaagaagaaacaattttcgttagt---gagaacttatgaattaacataaaagctgat 38372684  T
Q  164 ttatttgcataagcta 179  Q
    |||||||||| |||||    
T  38372685 ttatttgcattagcta 38372700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 16012736 - 16012792
Alignment:
Q  72 ataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||| ||||||||||| | | || |||||||| |||||| ||||    
T  16012736 ataagcttgtcaaagtagtttatgaaaaaactgcttctgaagatacaattttcgtta 16012792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 32917644 - 32917584
Alignment:
Q  68 attcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||| ||| |||  |||| |||||| ||  |||||||||||||||||||||||    
T  32917644 attcataagcttatcatagtggtttacgaaaaaacaacttatgaagatataatttttgtta 32917584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 48021703 - 48021667
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    |||||||||||||||||| |||||| |||||||||||    
T  48021703 tattattcataagcttgttaaagtagtttatgaaaaa 48021667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 17222859 - 17222971
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||| |    |||||||||||||| ||| ||||| ||||    
T  17222859 tattattcataagcttgtcaaggtagtttatgaaaaaacagattatgaagatacaattttcgttagt---tagaacttatgaattaacataaaaacttat 17222955  T
Q  164 ttatttgcataagcta 179  Q
    ||||||| ||||||||    
T  17222956 ttatttgaataagcta 17222971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 29877669 - 29877781
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||  || ||| ||||||||||||||| ||||||||||| ||||||||||| |    |||||||||||||| ||| ||||  ||||    
T  29877669 tattattcataagcttgctaaggtagtttatgaaaaagcagcttatgaagatacaatttttgttagt---gagaacttatgaattaacataaaagcttat 29877765  T
Q  164 ttatttgcataagcta 179  Q
     |||||||||||||||    
T  29877766 atatttgcataagcta 29877781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 48591480 - 48591368
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||| ||||||||| ||| ||||||||||| ||| ||||||||||| |||||| ||||||    |||||||||||||| ||  ||||  ||||    
T  48591480 tattattcatacgcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttaat---gagaacttatgaattaacgtaaaagcttat 48591384  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  48591383 ttatttgcataagcta 48591368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 36740934 - 36741046
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||| |||||||||||||||||| ||||||||||  ||||| ||||||||| ||||||  ||| |    |||||||||||||  ||||||||  ||||    
T  36740934 tattatgcataagcttgtcaaagtagtttatgaaaatacagttcatgaagatacaattttcattagt---gagaacttatgaatcaacacaaaagcttat 36741030  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  36741031 ttatttgcataagcta 36741046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 43415345 - 43415236
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| |||| || ||| |||| |||||| || ||||| |||||||||| ||||||| |  ||| |||||||||||| ||| ||||| ||||    
T  43415345 tattattcataaggttgttaatgtagtttacgaaaaaacaatttatcaagatataatatttgttagt--gaaaaacttatgaattaacataaaaatttat 43415248  T
Q  164 ttatttgcataa 175  Q
    |||||| |||||    
T  43415247 ttatttacataa 43415236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 43740131 - 43740066
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaat 130  Q
    |||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| ||||||| |||||    
T  43740131 tattattcataaacttgtctaagtaatttatgaaaaa-cagtttatgaagatacaatttttcttaat 43740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 46704326 - 46704217
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||| ||||||| || ||| ||||||||||| ||| ||||||||||| ||||||  ||| |    |||||||||||||| | | |||||||||     
T  46704326 tattattcatgagcttgttaaggtagtttatgaaaaaacagcttatgaagataaaattttcattagt---gagaacttatgaattaatataaaaagttac 46704230  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  46704229 ttatttgcataag 46704217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 35124420 - 35124481
Alignment:
Q  67 tattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||||||||| || ||||||||    
T  35124420 tattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaaattttgtta 35124481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 36255092 - 36254980
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||| |||||||||||||||| ||| ||| ||||||| ||| ||||||||||| ||||||  ||| |    |||||||||||||| ||| ||||  ||||    
T  36255092 tattgttcataagcttgtcaacgtagtttgtgaaaaaacagcttatgaagatacaattttaattagt---gagaacttatgaattaacataaaagcttat 36254996  T
Q  164 ttatttgcataagcta 179  Q
    |||| |||||||||||    
T  36254995 ttatctgcataagcta 36254980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 18424333 - 18424222
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||| ||||| || ||| ||||||||||| || |||||||||||| ||||||||||| |  ||| |||||||||||| ||| ||||  ||||    
T  18424333 tattattcataaacttgtgaaggtagtttatgaaaaa-caatttatgaagatacaatttttgttatt--gaa-aacttatgaattaacataaaagcttat 18424238  T
Q  164 ttatttgcataagcta 179  Q
    |||||| ||| |||||    
T  18424237 ttattttcatgagcta 18424222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 21216384 - 21216325
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||||||||||||||||| ||| |||||||||||| || |||||||| || ||||||    
T  21216384 tattattcataagcttgtcaaggtagtttatgaaaaagtaggttatgaagctacaatttt 21216325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 22273836 - 22273918
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataa 175  Q
    ||||||||||| ||| ||||||||||| ||||||||||| | |||||   ||||||||| ||| ||||  ||||||||||||||||    
T  22273836 tttatgaaaaaacagcttatgaagatacaatttttgttagtgagaag---ttatgaattaacataaaagtttatttatttgcataa 22273918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 23297468 - 23297577
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| ||||||| ||| |||||||||   ||| ||||||||||| |||||||||   ||   ||||||||||||||  || ||||  ||||    
T  23297468 tattattcataagtttgtcaaggtagtttatgaaa---cagcttatgaagatacaatttttgt---tagcgagaacttatgaattagcataaaagcttat 23297561  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  23297562 ttatttgcataagcta 23297577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 38345874 - 38345766
Alignment:
Q  67 tattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattta 166  Q
    |||||||||| ||||||||||| ||||||||||| ||  ||||||||||| |||||   ||| ||   |||||||||||||| ||| ||||  |||||||    
T  38345874 tattcataag-ttgtcaaagtagtttatgaaaaaacaacttatgaagatacaattt---ttattagccagaacttatgaattaacataaaagcttattta 38345779  T
Q  167 tttgcataagcta 179  Q
    ||| |||||||||    
T  38345778 tttacataagcta 38345766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 7148802 - 7148914
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||| |||| || ||| ||||||  ||| |    ||||||||||||||  || ||||  ||||    
T  7148802 tattattcataagcttgtcaaggtagtttttgaaaaaacagcttataaaaatacaattttctttagt---cagaacttatgaattagcataaaagcttat 7148898  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  7148899 ttatttgcataagcta 7148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 8601230 - 8601295
Alignment:
Q  63 ctattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||| |||||| |||||| ||| ||||||||||| | | ||||||||||| |||||||||||    
T  8601230 ctattatttataagcctgtcaatgtagtttatgaaaaaactggttatgaagatacaatttttgtta 8601295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 18630951 - 18630839
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||| ||| ||||||| || ||| ||||||||||| ||| ||||||||||| | |||| |||| |    |||||||||||||| | | ||||  ||||    
T  18630951 tattatccatgagcttgttaaggtagtttatgaaaaaacagcttatgaagataaagttttcgttagt---gagaacttatgaattaatataaaagcttat 18630855  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  18630854 ttatttgcataagcta 18630839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 28663606 - 28663667
Alignment:
Q  67 tattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||||||||| ||| ||||||||||| ||| || |||||||| |||||| ||||    
T  28663606 tattcataagcttgtcaaggtagtttatgaaaaaacagattctgaagatacaattttcgtta 28663667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 12495702 - 12495588
Alignment:
Q  64 tattattcataagcttgtcaaa--gtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagtt 161  Q
    ||||||||||||||||||||||  ||| ||||||||||| ||| | || |||||| ||| ||  ||| | ||||   ||||| |||| ||| ||||| ||    
T  12495702 tattattcataagcttgtcaaaaggtagtttatgaaaaaacagctaatcaagatacaatattcattagtgagaa---cttataaattaacataaaaactt 12495606  T
Q  162 atttatttgcataagcta 179  Q
    ||||||||||||||||||    
T  12495605 atttatttgcataagcta 12495588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 28074395 - 28074458
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| |||||||||||  || ||||||||||| |||||| ||||    
T  28074395 tattattcataagcttgtcaaggtagtttatgaaaaa-aagcttatgaagatacaattttcgtta 28074458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 19725323 - 19725382
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||| ||||| |||| || ||| ||||||||||| |||| |||||||||||||||||    
T  19725323 tattatttataagtttgttaaggtattttatgaaaaaacagtctatgaagatataatttt 19725382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 23335672 - 23335731
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||| | |||| ||| ||||||||||| ||| ||||||||||| ||||||    
T  23335672 tattattcataagcatatcaaggtagtttatgaaaaaacagcttatgaagatacaatttt 23335731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 43699436 - 43699393
Alignment:
Q  136 gaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||    
T  43699436 gaacttatgaattaacataaaaacttatttatttgcataagcta 43699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 52700600 - 52700529
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    ||||||| |||||||||| |||||  |||||||||||  ||||||||||||||  ||||| |||| ||||||    
T  52700600 tattatttataagcttgtaaaagtggtttatgaaaaaatagtttatgaagatacgattttcgttagtaagaa 52700529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 213004 - 212950
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatata 118  Q
    |||||||||||||||||| || ||| ||||||||||| ||  |||||||||||||    
T  213004 tattattcataagcttgttaaggtagtttatgaaaaaacaacttatgaagatata 212950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 2548077 - 2547992
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagct 178  Q
    ||||||||||| || |||||||||||| |||||| | |||| ||||   ||||| |||| | | ||||| |||||||||||||||||||    
T  2548077 tttatgaaaaaacaatttatgaagataaaattttcgctaatgagaa---cttataaattaatataaaaacttatttatttgcataagct 2547992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 15184595 - 15184640
Alignment:
Q  83 aaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||| ||||||||||| ||||||||||||||| |||||| ||||    
T  15184595 aaagtagtttatgaaaaaacagtttatgaagatacaattttcgtta 15184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 27368208 - 27368151
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatt 121  Q
    ||||||||||||| ||||||| |||  |||||||||| |||||||| |||||| ||||    
T  27368208 tattattcataagtttgtcaatgtagcttatgaaaaaacagtttataaagatacaatt 27368151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 32628810 - 32628867
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||||||||||||| | ||| ||||||||||| ||| || |||||||| ||||||    
T  32628810 ttattcataagcttgtcgaggtaatttatgaaaaaacagcttgtgaagatacaatttt 32628867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 897000 - 897036
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  897000 tattattcataagcttgtcaatgtagtttatgaaaaa 897036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 2494456 - 2494404
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    ||||||| |||||||||| || ||| |||||||||||  ||||||||||||||    
T  2494456 tattatttataagcttgtaaaggtagtttatgaaaaaatagtttatgaagata 2494404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 35405740 - 35405825
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    ||||||||||| ||| ||||||||||| |||||| |||| |||||    | ||| |||| ||| ||||  ||||||||||||||||||||    
T  35405740 tttatgaaaaaacagcttatgaagatagaattttcgttagtaaga----cctattaattaacataaaagcttatttatttgcataagcta 35405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 43699537 - 43699478
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcag--tttatgaagatataatttt 123  Q
    ||||||||||||||||||| ||| ||||||||||| |||   ||||||||||| ||||||    
T  43699537 ttattcataagcttgtcaatgtagtttatgaaaaaacagctcttatgaagatacaatttt 43699478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 48667768 - 48667812
Alignment:
Q  135 agaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    |||||||||||||| ||| ||||  ||||||||||||||||||||    
T  48667768 agaacttatgaattaacataaaagcttatttatttgcataagcta 48667812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 48819329 - 48819441
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| | ||||||||| |    |||||||||||||| ||| ||||  ||||    
T  48819329 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacattttttgttagt---gagaacttatgaattaacataaaagcttat 48819425  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  48819426 ttatttgcataagcta 48819441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 6337812 - 6337700
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||||||   ||   |||||||||||||| ||| ||||  ||||    
T  6337812 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgt---tagcgagaacttatgaattaacataaaagcttat 6337716  T
Q  164 ttatttgcataagcta 179  Q
    || |||||||||||||    
T  6337715 ttgtttgcataagcta 6337700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 37712100 - 37712209
Alignment:
Q  67 tattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattta 166  Q
    |||||||||||||||||| ||| ||||||||||| ||  ||||||||||| || ||| |||| |   ||||||||||||||| ||| ||||  |||||||    
T  37712100 tattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatacaactttcgttagt---aagaacttatgaattaacataaaagtttattta 37712196  T
Q  167 tttgcataagcta 179  Q
    |||||||||||||    
T  37712197 tttgcataagcta 37712209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 41196766 - 41196654
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||||| |    ||| ||| |||||| ||| |||   ||||    
T  41196766 tattattcataagcttgtcaatgtagtttatgaaaaaacagcttatgaagatacaatttttgttagt---gagagcttgtgaattaacataaaggcttat 41196670  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  41196669 ttatttgcataagcta 41196654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 4068145 - 4068257
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||  |||||||||||  ||||| |||| |    |||||||||||||| | | ||||  ||||    
T  4068145 tattattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatactattttcgttagt---gagaacttatgaattaatataaaagtttat 4068241  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  4068242 ttatttgcataagcta 4068257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 9572840 - 9572728
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| |||| || ||| ||||||||||| || |||||||||||| | ||||||||| |    |||||||||||||| | | ||||  ||||    
T  9572840 tattattcataagtttgttaaggtagtttatgaaaaaacaatttatgaagataaagtttttgttagt---gagaacttatgaattaatataaaagcttat 9572744  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  9572743 ttatttgcataagcta 9572728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 3069910 - 3069851
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||    
T  3069910 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttt 3069851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 26988180 - 26988286
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattt 165  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||| | |||| |   || |||||||||||| ||| ||||  | ||||    
T  26988180 ttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattgtcgttagt---aaaaacttatgaattaacataaaagctaattt 26988276  T
Q  166 atttgcataa 175  Q
    ||||||||||    
T  26988277 atttgcataa 26988286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 37329468 - 37329359
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||| |||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||  |    ||||||||| |||| ||| ||||  ||||    
T  37329468 tattattcataaacttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttggt---gagaacttataaattaacataaaagcttat 37329372  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  37329371 ttatttgcataag 37329359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 15515403 - 15515291
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| |||||||||||  || ||||||||||| |||||| |||| |    |||||||||||||| |||  |||  ||||    
T  15515403 tattattcataagcttgtcaaggtagtttatgaaaaaagagcttatgaagatacaattttcgttagt---gagaacttatgaattaacatgaaagcttat 15515307  T
Q  164 ttatttgcataagcta 179  Q
    |||||| | |||||||    
T  15515306 ttatttacttaagcta 15515291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 28690034 - 28690146
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| ||||||| ||| |||||||| || ||| ||||||||||| ||||||| ||| |    |||| || |||||| ||| ||||  ||||    
T  28690034 tattattcataagtttgtcaaggtagtttatgaacaaacagcttatgaagatacaatttttattagt---gagaaattctgaattaacataaaagcttat 28690130  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  28690131 ttatttgcataagcta 28690146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 22593463 - 22593352
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || | | |||| |||||| || ||||| |||||| ||||||||||| |    ||||||||| |||| ||| ||||  ||||    
T  22593463 tattattcataagcttgtaaatgcagtttacgaaaaatcactttataaagatacaatttttgttagt---gagaacttataaattaacataaaagcttat 22593367  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  22593366 ttatttgcataagct 22593352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 47413402 - 47413514
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||||||||||| ||| ||||||||| | ||| ||||||||||||||||| ||||  |  ||| || |||| |||| ||| ||||  ||||    
T  47413402 tattatttataagcttgtcaatgtagtttatgaaataacaggttatgaagatataatttgtgttggt--gaa-aaattataaattaacataaaagcttat 47413498  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  47413499 ttatttgcataagcta 47413514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 42367013 - 42367092
Alignment:
Q  96 aaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    ||||| || ||| |||||||| ||||||||||||||||||    ||||||||| ||| || || ||||||||||||||||||||    
T  42367013 aaaaaacattttgtgaagatacaatttttgttaataagaa----ttatgaattaacataagaacttatttatttgcataagcta 42367092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 13038977 - 13039089
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||| ||||||| || ||| ||||||||||| ||  ||||||||||| | |||| |||| | |||||   ||||||||| | | ||||  ||||    
T  13038977 tattattcatgagcttgttaaggtagtttatgaaaaaacaacttatgaagataaagttttcgttagtgagaag---ttatgaattaatataaaagtttat 13039073  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  13039074 ttatttgcataagcta 13039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 23544821 - 23544869
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaa 112  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| |||||||    
T  23544821 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaa 23544869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 39658380 - 39658320
Alignment:
Q  63 ctattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||| ||| ||| ||||||||||| ||| |||||||| || ||||||    
T  39658380 ctattattcataagcttgccaaggtaatttatgaaaaaacagcttatgaaggtacaatttt 39658320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 50919517 - 50919585
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataa 132  Q
    ||||||| ||||| ||||||| ||| ||||| ||||| ||| ||||||||||| |||||| ||||||||    
T  50919517 tattatttataagtttgtcaatgtagtttataaaaaaacaggttatgaagatacaattttcgttaataa 50919585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 16889021 - 16888963
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||| || ||| ||||||||||| ||| ||||||||||| ||||||    
T  16889021 tattattcataagcttgt-aaggtagtttatgaaaaaacagcttatgaagatacaatttt 16888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 23369332 - 23369438
Alignment:
Q  72 ataagcttgtcaaagtactttatg--aaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgac-acaaaaagttatttatt 168  Q
    ||||| ||||||||||| ||||||  ||||| |||||||||||||||||| ||| |||| | |||  |||||||||||| ||   ||||| |||||||||    
T  23369332 ataagtttgtcaaagtagtttatgaaaaaaaacagtttatgaagatataactttcgttagt-aga--aacttatgaattaacttaaaaaacttatttatt 23369428  T
Q  169 tgcataagct 178  Q
    ||||||||||    
T  23369429 tgcataagct 23369438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 35590165 - 35590219
Alignment:
Q  69 ttcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||| ||  ||||||||||| ||| ||||||||||| ||||||    
T  35590165 ttcataagcttgtcaaggttgtttatgaaaaaacagcttatgaagatacaatttt 35590219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 26435231 - 26435123
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||  |||| ||||||||||| ||||||||||| | ||||||||||||| | |||| |||| |    |||||||||||||| ||| | ||   |||    
T  26435231 tattatttttaagtttgtcaaagtagtttatgaaaaaactgtttatgaagatacatttttcgttact---gagaacttatgaattaacatataagtctat 26435135  T
Q  164 ttatttgcataa 175  Q
    ||||||||||||    
T  26435134 ttatttgcataa 26435123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26946158 - 26946101
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||| || ||| ||||||||||| ||  ||||||||||| ||||||    
T  26946158 ttattcataagcttgttaaggtagtttatgaaaaaacaacttatgaagatacaatttt 26946101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 10365201 - 10365237
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  10365201 tattattaataagcttgtcaaagtagtttatgaaaaa 10365237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 12256637 - 12256747
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||| ||||  | ||| ||||||||||| || ||||||||| || |||||| |||| |||||   ||||||||||| | | ||||| ||||    
T  12256637 tattatttataagattgttgatgtagtttatgaaaaa-caatttatgaaggtacaattttcgttagtaaga---acttatgaattaaaataaaaatttat 12256732  T
Q  164 ttatttgcataagct 178  Q
    ||||||| |||||||    
T  12256733 ttatttgtataagct 12256747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 31378807 - 31378743
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||| | ||||||||||| ||| |||||||||||   |||||| |||||| |||||||||||    
T  31378807 tattattaacaagcttgtcaaggtagtttatgaaaaaaacgtttataaagatacaatttttgtta 31378743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 39941471 - 39941507
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    |||||||||||||||||||||| || |||||||||||    
T  39941471 tattattcataagcttgtcaaaatagtttatgaaaaa 39941507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 39941540 - 39941576
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa 100  Q
    ||||||||||||||||||||||||| || ||||||||    
T  39941540 tattattcataagcttgtcaaagtagttaatgaaaaa 39941576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 39941612 - 39941664
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    |||||| ||||| ||||||||| || ||||||||||| || ||||||||||||    
T  39941612 tattatacataaacttgtcaaattagtttatgaaaaaacaatttatgaagata 39941664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 45267495 - 45267567
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatg-aaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    ||||||| || |||||||||| ||| |||||| ||||| ||| ||||||||||| |||||| |||| ||||||    
T  45267495 tattatttattagcttgtcaaggtagtttatgaaaaaaacagcttatgaagatacaattttcgttagtaagaa 45267567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 49971281 - 49971345
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||| |||||||||| || ||| ||||||||||| ||| ||| ||||||| |||||| ||||    
T  49971281 tattatttataagcttgttaatgtagtttatgaaaaaacagcttacgaagatacaattttcgtta 49971345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 38461338 - 38461224
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||| |||| || ||| ||||||||||| ||||||||||||||||||||||||||| | || ||||||||| |||| | | ||||| ||||    
T  38461338 tattatttataagtttgtaaatgtattttatgaaaaaacagtttatgaagatataatttttgttagtgag-agaacttataaattaaaataaaaacttat 38461240  T
Q  164 ttatttgcataagcta 179  Q
    |||||| |||||||||    
T  38461239 ttatttacataagcta 38461224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 41419531 - 41419642
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||| |    ||||||||| |||| ||| ||||| ||||    
T  41419531 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagt---gagaacttatcaattaacataaaaacttat 41419627  T
Q  164 ttatttgcataagct 178  Q
    |||||| ||||||||    
T  41419628 ttattttcataagct 41419642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 28625510 - 28625619
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||| |    ||||| |||||||| ||| ||||  ||||    
T  28625510 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagt---gagaacctatgaattaacataaaagcttat 28625606  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  28625607 ttatttgcataag 28625619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 17657272 - 17657385
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||| ||  ||| ||||||||||| ||  |||||||||||  ||||| |||| |    |||||||||||||| ||| |||| |||||    
T  17657272 tattattcataagcttgccattgtagtttatgaaaaaacatcttatgaagatacgattttcgttagt---gagaacttatgaattaacataaaaggttat 17657368  T
Q  164 ttatttgcataagctaa 180  Q
    |||||||||||||||||    
T  17657369 ttatttgcataagctaa 17657385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 28357171 - 28357284
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| | ||||||||||| ||| ||||||||||| ||| ||||||||||| |||||| |||||   ||| ||||||| |||| ||| ||||  ||||    
T  28357171 tattatttaaaagcttgtcaatgtagtttatgaaaaaacaggttatgaagatacaattttcgttaac--gaa-aacttataaattaacataaaagcttat 28357267  T
Q  164 ttatttgcataagctaa 180  Q
    |||||||||||||||||    
T  28357268 ttatttgcataagctaa 28357284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 39154809 - 39154705
Alignment:
Q  72 ataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgc 171  Q
    ||||||||||||| ||| ||||||||||| | | ||||||||||  ||||||| ||| |    |||||||||||||| ||||||||  ||||||||||||    
T  39154809 ataagcttgtcaaggtagtttatgaaaaaactgattatgaagatgcaatttttattatt---gagaacttatgaattaacacaaaagcttatttatttgc 39154713  T
Q  172 ataagcta 179  Q
    ||||||||    
T  39154712 ataagcta 39154705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 40452533 - 40452421
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattttt-gttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||||| ||| |||||||| || ||| ||||||||||||||||||| |||| |    |||||||||||||  ||| || |  ||||    
T  40452533 attattcataagcttgtcaaggtagtttatgaagaaacagcttatgaagatataatttttcgttagt---gagaacttatgaataaacataatagcttat 40452437  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  40452436 ttatttgcataagcta 40452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 13060658 - 13060545
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||| |||||||||||||||| ||| ||||||||||| ||| |||||||| ||  ||||| |||| |    |||||||||||||| ||| ||||  ||||    
T  13060658 tattgttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagttaccattttcgttagt---gagaacttatgaattaacataaaagcttat 13060562  T
Q  164 ttatttgcataagctaa 180  Q
    |||||||||| ||||||    
T  13060561 ttatttgcattagctaa 13060545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 24030245 - 24030356
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||||||| ||||||||||| ||  ||  || |||| |||||| |||| |    |||||||||||||| ||| ||||  ||||    
T  24030245 tattattcataagcttgtcaaagtagtttatgaaaaaaca-cttgcgaggatacaattttcgttagt---gagaacttatgaattaacataaaagcttat 24030340  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  24030341 ttatttgcataagcta 24030356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 1473386 - 1473446
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattttt 124  Q
    |||||||||||||||||||||  || ||||||||||| ||| ||||||||||| |||||||    
T  1473386 tattattcataagcttgtcaagttaatttatgaaaaaacagcttatgaagatacaattttt 1473446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 3977506 - 3977614
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatt 164  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||   || ||| |||||||| |    ||||| |||||||| ||| ||||  |||||    
T  3977506 attattcataagcttgtcaaggtagtttatgaaaaaacagtttatg--tatctaacttttgttagt---gagaacgtatgaattaacataaaagcttatt 3977600  T
Q  165 tatttgcataagct 178  Q
    ||||||||||||||    
T  3977601 tatttgcataagct 3977614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 12987070 - 12987006
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||| |||||||||||||||| ||| ||||||||||| |||||||||||| ||  ||||||||||    
T  12987070 tattgttcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagttaccatttttgtta 12987006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 43319033 - 43319097
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||| |||||||||| || ||| ||||||||||| |||||||||||| ||||||||| ||||    
T  43319033 tattatttataagcttgttaatgtagtttatgaaaaaacagtttatgaaggtataattttcgtta 43319097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 31637150 - 31637091
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||||||||||||||||| ||| ||||||||| | ||| ||||||||||| ||||||    
T  31637150 tattattcataagcttgtcaaggtaatttatgaaagaacagcttatgaagatacaatttt 31637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 41534653 - 41534712
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    ||||||||||||||||||||| ||| |||| |||||| ||| ||||||||||| ||||||    
T  41534653 tattattcataagcttgtcaaggtagtttacgaaaaaacagcttatgaagatacaatttt 41534712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 1576665 - 1576774
Alignment:
Q  69 ttcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatt 168  Q
    |||||||||||||||| ||| |||||| |||| ||  || |||||||| ||||||||||| |    |||||||| ||||| ||| ||||   ||||||||    
T  1576665 ttcataagcttgtcaatgtagtttatggaaaaacaacttgtgaagatacaatttttgttagt---gagaacttaagaattaacataaaactgtatttatt 1576761  T
Q  169 tgcataagctaat 181  Q
    |||||||||||||    
T  1576762 tgcataagctaat 1576774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 1608150 - 1608041
Alignment:
Q  69 ttcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatt 168  Q
    |||||||||||||||| ||| |||||| |||| ||  || |||||||| ||||||||||| |    |||||||| ||||| ||| ||||   ||||||||    
T  1608150 ttcataagcttgtcaatgtagtttatggaaaaacaacttgtgaagatacaatttttgttagt---gagaacttaagaattaacataaaactgtatttatt 1608054  T
Q  169 tgcataagctaat 181  Q
    |||||||||||||    
T  1608053 tgcataagctaat 1608041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 5559978 - 5559863
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaa---gcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagt 160  Q
    |||| |||||||||| ||||| ||| |||||||||||   |||| ||||||||||| |||||| |||| |    |||| ||||||||| ||| ||||  |    
T  5559978 tattcttcataagctcgtcaaggtagtttatgaaaaaaaagcagcttatgaagatacaattttcgttagt---gagaatttatgaatttacataaaagct 5559882  T
Q  161 tatttatttgcataagcta 179  Q
    |||||||||||||||||||    
T  5559881 tatttatttgcataagcta 5559863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 27805947 - 27806057
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattt 165  Q
    ||||| ||| ||||||||| ||| ||||||||||| ||  |||| |||||| ||||||||||| |  ||| ||||||| |||| ||| ||||  ||||||    
T  27805947 ttatttatacgcttgtcaatgtagtttatgaaaaaacatgttataaagatacaatttttgttagt--gaa-aacttataaattaacataaaagtttattt 27806043  T
Q  166 atttgcataagcta 179  Q
    ||||||||||||||    
T  27806044 atttgcataagcta 27806057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 11912158 - 11912054
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||| ||||||| |||||||||||| ||| |||||||  || ||||||||||| ||||||||||| |    |||||||||||||| |||  |||  ||||    
T  11912158 tattgttcataatcttgtcaaagtagtttgtgaaaaaagagcttatgaagatacaatttttgttagt---gagaacttatgaattaacatgaaagcttat 11912062  T
Q  164 ttatttgc 171  Q
    ||||||||    
T  11912061 ttatttgc 11912054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 12467294 - 12467359
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatg-aaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||||||||||| ||| |||||| ||||| ||| ||||||||| | |||||||||||    
T  12467294 tattattcataagcttgtcaaggtagtttatgaaaaaaacagcttatgaagagacaatttttgtta 12467359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 28357382 - 28357502
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| ||||| |||| || ||| ||||||||||| |||||||||||| |  |||||| |||| |    |||||||| ||||| | | ||||| ||||    
T  28357382 tattatttataagtttgttaatgtagtttatgaaaaaacagtttatgaaggtccaattttcgttagt---gagaacttacgaattaagataaaaacttat 28357478  T
Q  164 ttatttgcataagct-aatccaaa 186  Q
    ||||||||||||||| ||||||||    
T  28357479 ttatttgcataagctcaatccaaa 28357502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 29922245 - 29922133
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||  ||| ||||| | ||| ||||||| ||| |    ||| |||||||||| | | ||||  ||||    
T  29922245 tattattcataagcttgtcaaggtagtttatgaaaacacagcttatgcatatacaattttttttagt---gagagcttatgaattaatataaaagcttat 29922149  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  29922148 ttatttgcataagcta 29922133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 41059845 - 41059737
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||| |||| ||  ||||||||||| ||  ||||||||||  |||||| |||| |    |||||||||||||| ||| ||||  ||||    
T  41059845 tattattcataagcttatcaaggttgtttatgaaaaatcaccttatgaagattcaattttcgttagt---gagaacttatgaattaacataaaagcttat 41059749  T
Q  164 ttatttgcataa 175  Q
    ||||||||||||    
T  41059748 ttatttgcataa 41059737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 1868876 - 1868940
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||  ||||||||||| |||||| ||||    
T  1868876 tattattcacaagcttgtcaaggtagtttatgaaaaatcaacttatgaagatacaattttcgtta 1868940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 6144768 - 6144832
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||| ||||||||||||||| ||| |||||||||||  || ||||||| ||| |||||||||||    
T  6144768 tattactcataagcttgtcaaggtattttatgaaaaaatagcttatgaatatacaatttttgtta 6144832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 7364365 - 7364254
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| ||||| || || ||  ||||||||||| ||| ||||||| |    |||||||||||||| | | ||||  ||||    
T  7364365 tattattcataagcttgttaaggtagtttatcaacaaacaacttatgaagatacaatatttgttagt---gagaacttatgaattaatataaaagcttat 7364269  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  7364268 ttatttgcataagct 7364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 35536881 - 35536986
Alignment:
Q  70 tcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttattt 169  Q
    |||||||||||||||  || ||||||||||| ||| ||||||||||| |||||| |||| |    |||||||||||| | | | ||||  ||||||||||    
T  35536881 tcataagcttgtcaagatagtttatgaaaaaacagcttatgaagatacaattttcgttact---gagaacttatgaa-taatataaaagcttatttattt 35536976  T
Q  170 gcataagcta 179  Q
    ||||||||||    
T  35536977 gcataagcta 35536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 2577481 - 2577372
Alignment:
Q  68 attcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattttt-gttaataagaagaacttatgaattgacacaaaaagttattta 166  Q
    ||||||||||||||||| ||| ||||||||||| ||  || | || ||| ||||||| |||| | ||||   |||||||||| ||| || || |||||||    
T  2577481 attcataagcttgtcaaggtaatttatgaaaaaacaacttgtaaaaatacaatttttcgttagtgagaa---cttatgaattaacataacaatttattta 2577385  T
Q  167 tttgcataagcta 179  Q
    |||||||||||||    
T  2577384 tttgcataagcta 2577372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 2878733 - 2878669
Alignment:
Q  63 ctattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||||| ||||||| ||  ||||||||| | ||||||| ||||||| |||||||||||    
T  2878733 ctattattcataagtttgtcaatgtggtttatgaaacaacagttta-gaagatacaatttttgtta 2878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 7111039 - 7110981
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgt 126  Q
    ||||||||||||| |||||||||   ||||||||||| ||| ||||||||||| |||||||||    
T  7111039 tattattcataagattgtcaaag---tttatgaaaaa-cagcttatgaagatacaatttttgt 7110981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 4026961 - 4027067
Alignment:
Q  70 tcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttattt 169  Q
    ||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||||| |    |||||||||||||| ||| || |  ||||||||||    
T  4026961 tcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagt---gagaacttatgaattaacataatagcttatttattt 4027057  T
Q  170 gcataagcta 179  Q
    ||||||||||    
T  4027058 gcataagcta 4027067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 5903563 - 5903680
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataaga--agaacttatgaattgacacaaaaagtt 161  Q
    ||||| ||||||||||||||||||| || |||||||| ||  ||||||||||| ||||||||||| | |||  |||||||| ||||  ||| ||||  ||    
T  5903563 tattactcataagcttgtcaaagtagttaatgaaaaaacatcttatgaagatacaatttttgttagtgagatgagaacttaagaataaacataaaagctt 5903662  T
Q  162 atttatttgcataagcta 179  Q
    ||||||||||||||||||    
T  5903663 atttatttgcataagcta 5903680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 36501571 - 36501459
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||  |||| |    |||||| ||||||| ||| ||||  ||||    
T  36501571 tattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagataaaatttgcgttagt---gagaactcatgaattaacataaaagcttat 36501475  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  36501474 ttatttgcataagcta 36501459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 33321366 - 33321256
Alignment:
Q  66 ttattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttattt 165  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||||| |    ||| ||| |||||| ||| |||   ||||||    
T  33321366 ttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagt---gagagcttgtgaattaacataaaggtttattt 33321270  T
Q  166 atttgcataagcta 179  Q
    ||||||||||||||    
T  33321269 atttgcataagcta 33321256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 735994 - 736106
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||| |||||||||| || ||  |||||||||||  |||||||||||||||||||||||||| |    ||||||||| |||| ||| ||||| ||||    
T  735994 tattatttataagcttgttaaggtggtttatgaaaaaatagtttatgaagatataatttttgttatt---gagaacttataaattaacataaaaacttat 736090  T
Q  164 ttatttgcataagcta 179  Q
    |||| | |||||||||    
T  736091 ttatatacataagcta 736106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 29133723 - 29133614
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||| ||||||  ||  ||| || |||| |||||||| |||||| |||||| ||||||  ||| ||||||| |||||||||||||| ||||    
T  29133723 tattattcataagtttgtcactgtggtttgtggaaaaacagtttataaagatacaattttcgttaat--gaa-aacttataaattgacacaaaaatttat 29133627  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  29133626 ttatttgcataag 29133614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 23956315 - 23956209
Alignment:
Q  69 ttcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatt 168  Q
    |||||||| |||| || ||| |||||| |||| |||||||| |||||| |||||| |||||| ||||   ||||| |||| ||| ||||| |||||||||    
T  23956315 ttcataagtttgtaaatgtagtttatggaaaaacagtttataaagatacaattttcgttaatgagaa---cttataaattaacataaaaacttatttatt 23956219  T
Q  169 tgcataagct 178  Q
    ||||||||||    
T  23956218 tgcataagct 23956209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 38216049 - 38216161
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| |||| ||||||  ||  |||||||||| |||||| |||| |    ||||||||||| || ||| ||||  ||||    
T  38216049 tattattcataagcttgtcaaggtagtttaggaaaaaatagcatatgaagatacaattttcgttagt---gagaacttatgagttaacataaaagcttat 38216145  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  38216146 ttatttgcataagcta 38216161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 887442 - 887553
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| |||||| |||| | | ||||||||||| |||||   | | ||  ||||||||||||||| ||| ||||  ||||    
T  887442 tattattcataagcttgtcaaggtagtttatgtaaaacctgcttatgaagatacaattt---tcattagcaagaacttatgaattaacataaaagcttat 887538  T
Q  164 ttatttgcataagct 178  Q
     ||||||||||||||    
T  887539 ctatttgcataagct 887553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 4090519 - 4090630
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||| |||||||| ||| |  |||||||| ||| ||| ||||||| |||||| ||||   ||||   |||||||||| |||||| || ||||    
T  4090519 tattattcataatcttgtcaaggtagtcaatgaaaaaacagcttacgaagatacaattttcgttaccgagaa---cttatgaattaacacaacaacttat 4090615  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  4090616 ttatttgcataagct 4090630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 12223882 - 12223934
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    |||||||||||||| |||||| ||| ||||||||||| |||||||||||||||    
T  12223882 tattattcataagcctgtcaaggtagtttatgaaaaaacagtttatgaagata 12223934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 12442843 - 12442895
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    |||||||||||||||||||||  || ||||||||||||||| |||||||||||    
T  12442843 tattattcataagcttgtcaagatagtttatgaaaaagcagcttatgaagata 12442895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 42064881 - 42064992
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| || ||| ||||| |||||  |  |||||||||||| ||||| |||| |   ||||||||||||||| | | ||||  ||||    
T  42064881 tattattcataagcttgttaaggtagtttataaaaaaataacttatgaagatatcattttcgttagt---aagaacttatgaattaatataaaagcttat 42064977  T
Q  164 ttatttgcataagct 178  Q
    |||||||||||||||    
T  42064978 ttatttgcataagct 42064992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 26440161 - 26440232
Alignment:
Q  105 tttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataag 176  Q
    |||||||||||| ||||||||||||||| || ||||||| |||| | | ||||| |||||||||| ||||||    
T  26440161 tttatgaagatacaatttttgttaataacaacaacttataaattaaaataaaaacttatttatttacataag 26440232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 8832487 - 8832599
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||| |||||||||| |||| ||| ||||||||||  ||| |||  |||||| |||||| |||| |  ||| |||||||||||| ||| ||||  ||||    
T  8832487 tattaatcataagcttttcaaggtagtttatgaaaacacaggttagaaagatacaattttcgttagt--gaa-aacttatgaattaacataaaagcttat 8832583  T
Q  164 ttatttgcataagcta 179  Q
    ||||||||||||||||    
T  8832584 ttatttgcataagcta 8832599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 12267027 - 12267087
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattttt 124  Q
    ||||||| ||||||||||| | ||| |||||||||||  || |||||||||||||||||||    
T  12267027 tattatttataagcttgtcgatgtagtttatgaaaaaataggttatgaagatataattttt 12267087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 12683662 - 12683598
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||||||||||| || | |||| |||||| ||| ||||||||||| |||||| ||||    
T  12683662 tattattcataagcttgtcagagaaatttacgaaaaaacagcttatgaagatacaattttggtta 12683598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 21788487 - 21788596
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    |||||||||||||||||| ||  || ||||||||||| ||  ||||||||||| |||||| |||| |    ||| |||||||||| | | ||||  ||||    
T  21788487 tattattcataagcttgttaagatagtttatgaaaaaacaacttatgaagataaaattttcgttagt---gagagcttatgaattaatataaaagcttat 21788583  T
Q  164 ttatttgcataag 176  Q
    |||||||||||||    
T  21788584 ttatttgcataag 21788596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 25836768 - 25836718
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaaga 114  Q
    ||||||||||||||||||||| ||| ||||||||||| | | |||||||||    
T  25836768 tattattcataagcttgtcaaggtagtttatgaaaaaacggcttatgaaga 25836718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 39592280 - 39592338
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||||| ||| ||||||||||   || ||| ||||||||||||||    
T  39592280 attattcataagcttgtcaaggtagtttatgaaaataaagcttaagaagatataatttt 39592338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 2790125 - 2790068
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattt 122  Q
    |||||| ||||||||||||| ||| |||||||| || ||| ||||||||||| |||||    
T  2790125 attattgataagcttgtcaaggtattttatgaataaacagcttatgaagatacaattt 2790068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 13098029 - 13098058
Alignment:
Q  49 tttatttgcataagctattattcataagct 78  Q
    ||||||||||||||||||||||||||||||    
T  13098029 tttatttgcataagctattattcataagct 13098058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 7480887 - 7480847
Alignment:
Q  135 agaacttatgaattgacacaaaaagttatttatttgcataa 175  Q
    |||||||||||||| ||| ||||| ||||||||||||||||    
T  7480887 agaacttatgaattaacataaaaacttatttatttgcataa 7480847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 7576916 - 7576809
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatt 164  Q
    ||||||||||||||||| ||  || ||||| ||||| |||||||||||||||||||||| ||| ||   |||||||||| |||| ||| ||||| |||||    
T  7576916 attattcataagcttgttaacataatttataaaaaaacagtttatgaagatataattttcgttgat---aagaacttattaattaacataaaaacttatt 7576820  T
Q  165 tatttgcataa 175  Q
    |||||| ||||    
T  7576819 tatttgtataa 7576809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 13429488 - 13429544
Alignment:
Q  67 tattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||    
T  13429488 tattcataagcttgtcaaagtagtttatgaaaaaacagtttatgaggatacaatttt 13429544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 18078302 - 18078238
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||| |||||||| ||||||| ||| ||||||||||| |||||||| ||||||||||||||||||    
T  18078302 tatttttcataagtttgtcaatgtattttatgaaaaaacagtttataaagatataatttttgtta 18078238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 21610104 - 21609997
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatt 164  Q
    |||||| |||||||||| || ||| |||||||||||  |||||||||| |||||||||| |||| |   |||||||||| |||| | | ||||| |||||    
T  21610104 attatttataagcttgttaatgtagtttatgaaaaaatagtttatgaatatataattttcgttagt---aagaacttataaattaaaataaaaacttatt 21610008  T
Q  165 tatttgcataa 175  Q
    |||||||||||    
T  21610007 tatttgcataa 21609997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 2027231 - 2027120
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatt 164  Q
    |||||||| ||| |||||||   | ||||||||||| ||| ||||||||||| || |||||||| |   ||||||||||||||| ||| ||||  ||||     
T  2027231 attattcagaagtttgtcaagacagtttatgaaaaaacagcttatgaagatacaacttttgttagt---aagaacttatgaattaacataaaagtttatc 2027135  T
Q  165 tatttgcataagcta 179  Q
    |||||||||||||||    
T  2027134 tatttgcataagcta 2027120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 16589781 - 16589845
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||| ||||||||| | ||||||||||| || ||||||||||||| ||||| ||||    
T  16589781 tattattcataagtttgtcaaaggagtttatgaaaaaacaatttatgaagatatgattttcgtta 16589845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16605599 - 16605535
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||||||||||| ||||||||| | ||||||||||| || ||||||||||||| ||||| ||||    
T  16605599 tattattcataagtttgtcaaaggagtttatgaaaaaacaatttatgaagatatgattttcgtta 16605535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 2255768 - 2255873
Alignment:
Q  68 attcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttat 167  Q
    |||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||||||| || |    ||||| |||||||| ||| ||||  ||||||||    
T  2255768 attcataagcttgttaaggtaatttatgaaaaaacagcttatgaagatacaatttttggtagt---gagaacatatgaattaacataaaagcttatttat 2255864  T
Q  168 ttgcataag 176  Q
    || ||||||    
T  2255865 ttacataag 2255873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 21891394 - 21891282
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| ||| ||||||||| | ||  ||||||||||| |||||| ||   |   ||||||||||||||| ||| ||||  ||||    
T  21891394 tattattcataagcttgtcaatgtagtttatgaaataacaacttatgaagatagaattttcgt---tcgcaagaacttatgaattaacataaaagcttat 21891298  T
Q  164 ttatttgcataagcta 179  Q
    | ||| ||||||||||    
T  21891297 tcattcgcataagcta 21891282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 15054633 - 15054577
Alignment:
Q  72 ataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    ||||| |||| |||||| |||||||||||||| |||||||||||| |||||| ||||    
T  15054633 ataagtttgtaaaagtattttatgaaaaagcaatttatgaagatacaattttcgtta 15054577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 3211049 - 3210933
Alignment:
Q  72 ataagcttgtcaaagtactttatgaa-----aaagcagtttatgaagatataatttttgttaataaga----agaacttatgaattgacacaaaaagtta 162  Q
    ||||||||||||| ||| ||||||||     ||| ||| ||||||||||| ||||||  ||||| |||    |||||||||||||| ||| ||||  |||    
T  3211049 ataagcttgtcaatgtagtttatgaagaaaaaaaacagcttatgaagatacaattttcattaatgagagctgagaacttatgaattaacataaaagctta 3210950  T
Q  163 tttatttgcataagcta 179  Q
    |||||||||||||||||    
T  3210949 tttatttgcataagcta 3210933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 8014819 - 8014882
Alignment:
Q  65 attattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||||||||||| ||| ||||||||||| | |  |||||||||| |||||| ||||    
T  8014819 attattcataagcttgtcaaggtagtttatgaaaaaactgcatatgaagatacaattttggtta 8014882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 10755336 - 10755231
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttat 163  Q
    ||||||||||||||||||||| |||  ||||||||||  || |||||||   | |||||| |||| |   ||||||||||||||| ||| ||||  ||||    
T  10755336 tattattcataagcttgtcaaggtaacttatgaaaaaatagcttatgaa---acaattttcgttagt---aagaacttatgaattaacataaaagcttat 10755243  T
Q  164 ttatttgcataa 175  Q
    ||||||||||||    
T  10755242 ttatttgcataa 10755231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 32165298 - 32165205
Alignment:
Q  83 aaagtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    |||||| ||||||||||| ||||||||||||||| |||||| |||| |    ||| ||||| |||| | | ||||| |||||||||| |||||||||    
T  32165298 aaagtagtttatgaaaaaacagtttatgaagatacaattttcgttagt---gagagcttataaattaaaataaaaacttatttatttacataagcta 32165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 3829949 - 3829904
Alignment:
Q  90 tttatgaaaaagcagtttatgaagatataatttttgttaataagaa 135  Q
    ||||||||||| ||  ||||||||||| ||||||||||||||||||    
T  3829949 tttatgaaaaaacaacttatgaagataaaatttttgttaataagaa 3829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 25430819 - 25430762
Alignment:
Q  67 tattcataagcttgtcaaagtactttatga-aaaagcagtttatgaagatataatttt 123  Q
    |||||||||||||||||| ||| ||||||| |||| ||| ||||||||||| ||||||    
T  25430819 tattcataagcttgtcaaggtagtttatgaaaaaaacagcttatgaagatacaatttt 25430762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 34509942 - 34509999
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatt 121  Q
    ||||||||||||| ||||||| | | ||||||| |||  |||||||||||||||||||    
T  34509942 tattattcataagtttgtcaatggagtttatgataaaagagtttatgaagatataatt 34509999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16989817 - 16989753
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataatttttgtta 128  Q
    |||||||||||   |||| |||||| |||| |||||| |||||||||||||||| ||||| ||||    
T  16989817 tattattcatatatttgtgaaagtattttaagaaaaaacagtttatgaagatatgattttcgtta 16989753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 24625881 - 24625933
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagata 116  Q
    |||||||||||||||||| || ||| |||||||||||  || |||||||||||    
T  24625881 tattattcataagcttgttaaggtagtttatgaaaaattagcttatgaagata 24625933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 35071416 - 35071372
Alignment:
Q  135 agaacttatgaattgacacaaaaagttatttatttgcataagcta 179  Q
    |||||||||||||| ||| ||||  ||||||||||||||||||||    
T  35071416 agaacttatgaattaacataaaagcttatttatttgcataagcta 35071372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 24775 - 24889
Alignment:
Q  64 tattattcataagcttgtcaaa--gtactttatgaaaaagcagtttatgaagatataatttttgttaataagaagaacttatgaattgacacaaaaagtt 161  Q
    ||||||||||||||||||||||  ||| ||||||||||| ||| | || |||||| ||| ||  ||| | ||||   ||||| |||| ||| ||||| ||    
T  24775 tattattcataagcttgtcaaaaggtagtttatgaaaaaacagctaatcaagatacaatattcattagtgagaa---cttataaattaacataaaaactt 24871  T
Q  162 atttatttgcataagcta 179  Q
    ||||||||||||||||||    
T  24872 atttatttgcataagcta 24889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 58924 - 58866
Alignment:
Q  64 tattattcataagcttgtcaaagtactttatgaaaaagcagtttatgaagatataattt 122  Q
    |||||||| |||| ||||||| ||| |||||||||||| | |||||||||||| |||||    
T  58924 tattattcttaagtttgtcaatgtagtttatgaaaaagtattttatgaagatacaattt 58866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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