View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_12 (Length: 379)
Name: NF1430_low_12
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 52593342 - 52593000
Alignment:
| Q |
18 |
gtagtagtatattatttgtgcgtgatagaaggtaatctctttgtaataataatacatgagnnnnnnnnnnnnnnnnnnnnnaagatttgaa-tttcatga |
116 |
Q |
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| T |
52593342 |
gtagtagtatattgtttgtgcgtgatagaaggtaatctctttgtaataataatacatgagtgatatgatgatgatgatg---agatttgaaatttcatga |
52593246 |
T |
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| Q |
117 |
ctagtaaaaagttgaatgttgccaaggttactatgactgtttctaactttagaatcgatgtatgtatgtatgtaatgagtgttggattatttgttctatt |
216 |
Q |
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| T |
52593245 |
ctagtaaaaagttgaatgttgccaaggttactatgactgtttctaactttagaatcgatgtatgtat--atgtaatgagtgttggattatttgttctatt |
52593148 |
T |
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| Q |
217 |
cttgattgattagggattccctgttttagcaaattttttacattagttttctcaacaaatataaatcacatttagacagggaaactatgttctgcacacg |
316 |
Q |
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| T |
52593147 |
cttgattgattagggattccctgttttagcaaattttttacattagttttctcaacaaatataaatcacatttagacagggaaactatgttctgcacacg |
52593048 |
T |
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| Q |
317 |
tggagttgatggttttctggctttatcgttgtttgtctaattttcatc |
364 |
Q |
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| T |
52593047 |
tggagttgatggttttctggctttatcgttgtttctctaattttcatc |
52593000 |
T |
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