View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1430_low_14 (Length: 350)
Name: NF1430_low_14
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 332
Target Start/End: Original strand, 47425225 - 47425535
Alignment:
| Q |
22 |
atgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagattgaagttcaatcgctctgtcttggttcatagaagcgccgtgtt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
47425225 |
atgacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagttcaatcgctttgtcttggtccatagaaacgccgtgtt |
47425324 |
T |
|
| Q |
122 |
atctccgttgctcttttaaaccaactgcacttcagatgttttctgtatgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgcca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47425325 |
atctccgttgctcttttaaaccaactgcacttcagatgttttctgtacgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgcca |
47425424 |
T |
|
| Q |
222 |
ttagccataagcatatgtattaggttataggcatcgattcatttcatgattatttgtactactaaaacatttagaaccacatgaccaatagaattcaaat |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47425425 |
ttagccttaagcatatgtattaggttataggcatcgattcatttcatgattatttgtactactaaaacatttagaaccacatgaccaatagaattcaaat |
47425524 |
T |
|
| Q |
322 |
catgtcataga |
332 |
Q |
| |
|
||||||||||| |
|
|
| T |
47425525 |
catgtcataga |
47425535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 47391256 - 47391316
Alignment:
| Q |
24 |
gacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagattgaagtt |
85 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
47391256 |
gacatgata-tgaaactggtttgagaaacccaccttcaatttgttaaataaagtttgaagtt |
47391316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 47419620 - 47419681
Alignment:
| Q |
24 |
gacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagattgaagtt |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| | |||||||| |||||||| |
|
|
| T |
47419620 |
gacatgatagtgaaactggattgagaaacccaccttcaatttattaaataaagtttgaagtt |
47419681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 47422092 - 47422153
Alignment:
| Q |
24 |
gacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagattgaagtt |
85 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||||||| | |||||||| |||||||| |
|
|
| T |
47422092 |
gacatgatggtgaaactggtttgagaaacccaccttcaatttattaaataaagtttgaagtt |
47422153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 47408395 - 47408471
Alignment:
| Q |
24 |
gacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagattgaagttcaatcgctctgtctt |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||||||| || | ||||| |||||||||||| ||| |||||| |
|
|
| T |
47408395 |
gacatgatagccaaactggtttgagaaacagaccttcaatttttccattaaagtttgaagttcaatggctttgtctt |
47408471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University