View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_15 (Length: 342)
Name: NF1430_low_15
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 13446312 - 13446002
Alignment:
| Q |
12 |
acagaaagaggcgcgaacactacctaaacgacaacaaaacacagctgaagcgccaagcagacagctacaaaccggacaccaacagaagtcggtaaatact |
111 |
Q |
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| T |
13446312 |
acagaaggaggcgcgaacacaacctaaacgacaacaaaacacagctgaagcgccaagcagacagctacaaaccggacaccaacagaagtcggtaaagact |
13446213 |
T |
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| Q |
112 |
cagctgacctgcgaccttgtaggccctaaatcacaatgtacaaataaatggaaggttgtttctgattgattcacacacaccgaatacaatcttcggtcat |
211 |
Q |
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| T |
13446212 |
cagctgacctgtgaccttgtaggccctaaatcacaatgtagaaataaatggaaggttgtttctgattgattcac--acaccgaatacaatcttcggtcat |
13446115 |
T |
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| Q |
212 |
atcctgcaaaatgactccacaatgagctagagtacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgagac |
311 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13446114 |
atcctgcaaaatgactccacgatgagctagagcacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgaaac |
13446015 |
T |
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| Q |
312 |
atctatatctcta |
324 |
Q |
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||| ||||||||| |
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| T |
13446014 |
atccatatctcta |
13446002 |
T |
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